Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   U471_RS16255 Genome accession   NC_022653
Coordinates   3373258..3373947 (-) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens CC178     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368258..3378947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS16220 (U471_33800) fliW 3368349..3368780 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  U471_RS16225 (U471_33810) - 3368810..3369379 (-) 570 WP_023357152.1 DUF6470 family protein -
  U471_RS16230 (U471_33820) flgL 3369470..3370387 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  U471_RS16235 (U471_33830) flgK 3370399..3371916 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  U471_RS16240 (U471_33840) - 3371932..3372414 (-) 483 WP_003151394.1 flagellar protein FlgN -
  U471_RS16245 (U471_33850) flgM 3372429..3372695 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  U471_RS16250 (U471_33860) - 3372765..3373184 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  U471_RS16255 (U471_33870) comFC 3373258..3373947 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  U471_RS16260 (U471_33880) - 3373953..3374237 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  U471_RS16265 (U471_33890) comFA 3374295..3375680 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  U471_RS16270 (U471_33900) - 3375788..3376636 (-) 849 WP_003151387.1 DegV family protein -
  U471_RS16275 (U471_33910) degU 3376734..3377423 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  U471_RS16280 (U471_33920) degS 3377500..3378663 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=63193 U471_RS16255 WP_197197403.1 3373258..3373947(-) (comFC) [Bacillus amyloliquefaciens CC178]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=63193 U471_RS16255 WP_197197403.1 3373258..3373947(-) (comFC) [Bacillus amyloliquefaciens CC178]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment