Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LP088_RS03025 Genome accession   NZ_CP087814
Coordinates   585921..586979 (+) Length   352 a.a.
NCBI ID   WP_112741888.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM109238     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 580921..591979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP088_RS03015 (LP088_03010) glmU 581249..582604 (+) 1356 WP_112741886.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  LP088_RS03020 (LP088_03015) - 582945..585653 (-) 2709 WP_112741887.1 penicillin-binding protein 1A -
  LP088_RS03025 (LP088_03020) comM 585921..586979 (+) 1059 WP_112741888.1 pilus assembly protein PilM Machinery gene
  LP088_RS03030 (LP088_03025) - 586979..587857 (+) 879 WP_078273209.1 PilN domain-containing protein -
  LP088_RS03035 (LP088_03030) - 587854..588696 (+) 843 WP_078273208.1 type 4a pilus biogenesis protein PilO -
  LP088_RS03040 (LP088_03035) - 588693..589223 (+) 531 WP_228157777.1 pilus assembly protein PilP -
  LP088_RS03045 (LP088_03040) - 589258..591378 (+) 2121 WP_078273207.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38370.49 Da        Isoelectric Point: 4.7425

>NTDB_id=631596 LP088_RS03025 WP_112741888.1 585921..586979(+) (comM) [Moraxella bovis strain SAM109238]
MGLSFSSKGRHLLGLDVSTTSVKLVELTKQQGRLHLKSYGVEPLEPGWVVDKNIVNGEEVGEAIARLVRRSGAGAKDAAT
AVSGSAVITKIIDMETNMSDSDREAQIKLDAEQYIPYPLAEVNMDFEVLGPSTTNPNLVRVLLAASRSENVDQRVETLLM
GGLTAKVMDIESHAIERAFSLMVDNLPNDPQVVALIDLGHKQSTLYIAKDGEFIYNREQGFGGAQLTEEIQSRYSIPYHD
ATIGKHEHTLPADYHESVLTPFMENIVQQISRSLQFYFSSSEYNNVDHIILCGGTSALPGLAQMVQQRVGGMVSVANPFE
GMSIDSRIDTVTLQKDAPSLMAACGLALRGFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=631596 LP088_RS03025 WP_112741888.1 585921..586979(+) (comM) [Moraxella bovis strain SAM109238]
GTGGGACTATCTTTTTCTTCTAAGGGTCGGCATCTTCTCGGCTTAGATGTCAGTACCACTTCCGTTAAACTTGTTGAGCT
AACAAAACAACAAGGAAGACTTCATTTGAAGTCTTATGGCGTTGAGCCGCTTGAGCCGGGTTGGGTTGTTGACAAAAATA
TTGTCAATGGTGAAGAAGTGGGCGAGGCCATCGCTCGTTTGGTACGTCGTTCTGGTGCTGGTGCTAAAGACGCAGCAACG
GCAGTATCAGGCTCGGCGGTGATTACCAAAATTATTGACATGGAAACAAACATGTCTGATTCTGACCGCGAGGCCCAAAT
CAAGCTGGATGCTGAGCAGTATATCCCATATCCATTGGCGGAAGTGAATATGGATTTTGAGGTGTTAGGACCATCAACGA
CTAACCCGAACTTGGTGCGAGTTCTGCTTGCTGCTTCTCGTTCTGAGAACGTGGATCAGCGTGTCGAGACTCTCTTGATG
GGTGGTTTGACAGCCAAAGTGATGGATATTGAGTCTCATGCCATTGAGCGTGCATTTAGTTTGATGGTGGATAATCTGCC
TAATGACCCACAGGTGGTAGCACTCATTGATTTGGGACATAAGCAGTCTACACTGTATATCGCCAAAGATGGTGAATTTA
TCTATAACCGTGAGCAAGGTTTTGGTGGGGCTCAGTTAACTGAAGAGATTCAGTCGCGTTACAGTATTCCTTATCATGAT
GCTACCATCGGTAAGCATGAACATACACTGCCTGCTGATTATCATGAGAGCGTGCTCACACCTTTTATGGAAAATATCGT
CCAACAAATCAGCCGTTCATTGCAATTTTATTTCTCATCTAGCGAATACAACAATGTTGACCATATTATCTTATGTGGTG
GCACTTCTGCGCTGCCAGGACTGGCTCAAATGGTGCAACAACGTGTCGGGGGTATGGTATCAGTAGCAAATCCTTTTGAG
GGTATGTCTATTGACTCACGCATTGATACCGTTACGCTCCAAAAAGATGCACCAAGCCTGATGGCGGCATGTGGATTGGC
TTTAAGGGGGTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

49.138

98.864

0.486
  pilM Acinetobacter baumannii D1279779

48.851

98.864

0.483
  comM Acinetobacter baylyi ADP1

47.701

98.864

0.472
  pilM Legionella pneumophila strain ERS1305867

39.42

98.011

0.386