Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5879_RS03830 Genome accession   NZ_CP104588
Coordinates   808799..809296 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain WTJH32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 803799..814296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5879_RS03815 (N5879_03815) bfr 803807..804271 (+) 465 WP_016852423.1 bacterioferritin -
  N5879_RS03820 (N5879_03820) uvrA 804343..807180 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  N5879_RS03825 (N5879_03825) - 807394..808782 (+) 1389 WP_003103910.1 MFS transporter -
  N5879_RS03830 (N5879_03830) ssb 808799..809296 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  N5879_RS03835 (N5879_03835) pchA 809385..810815 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  N5879_RS03840 (N5879_03840) pchB 810812..811117 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  N5879_RS03845 (N5879_03845) pchC 811117..811872 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  N5879_RS03850 (N5879_03850) pchD 811869..813512 (-) 1644 WP_016852424.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=631244 N5879_RS03830 WP_003114685.1 808799..809296(+) (ssb) [Pseudomonas aeruginosa strain WTJH32]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=631244 N5879_RS03830 WP_003114685.1 808799..809296(+) (ssb) [Pseudomonas aeruginosa strain WTJH32]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515