Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5877_RS10960 Genome accession   NZ_CP104586
Coordinates   2396828..2397325 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain WTJH6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2391828..2402325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5877_RS10940 (N5877_10940) pchD 2392612..2394255 (+) 1644 WP_009877104.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  N5877_RS10945 (N5877_10945) pchC 2394252..2395007 (+) 756 WP_009877105.1 pyochelin biosynthesis editing thioesterase PchC -
  N5877_RS10950 (N5877_10950) pchB 2395007..2395312 (+) 306 WP_009877106.1 isochorismate lyase PchB -
  N5877_RS10955 (N5877_10955) pchA 2395309..2396739 (+) 1431 WP_003114686.1 isochorismate synthase PchA -
  N5877_RS10960 (N5877_10960) ssb 2396828..2397325 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  N5877_RS10965 (N5877_10965) - 2397342..2398730 (-) 1389 WP_003103910.1 MFS transporter -
  N5877_RS10970 (N5877_10970) uvrA 2398944..2401781 (+) 2838 WP_019726773.1 excinuclease ABC subunit UvrA Machinery gene
  N5877_RS10975 (N5877_10975) bfr 2401853..2402317 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=631157 N5877_RS10960 WP_003114685.1 2396828..2397325(-) (ssb) [Pseudomonas aeruginosa strain WTJH6]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=631157 N5877_RS10960 WP_003114685.1 2396828..2397325(-) (ssb) [Pseudomonas aeruginosa strain WTJH6]
ATGGCCCGTGGGGTTAACAAAGTCATTCTAGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515