Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPH35_RS05235 Genome accession   NZ_CP087711
Coordinates   1158649..1159209 (-) Length   186 a.a.
NCBI ID   WP_039046679.1    Uniprot ID   A0A1A9B0G7
Organism   Plesiomonas shigelloides strain 7A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1153649..1164209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH35_RS05235 ssb 1158649..1159209 (-) 561 WP_039046679.1 single-stranded DNA-binding protein Machinery gene
  LPH35_RS05240 uvrA 1159469..1162324 (+) 2856 WP_230432887.1 excinuclease ABC subunit UvrA -
  LPH35_RS05245 - 1162424..1163554 (-) 1131 WP_230432888.1 alanine--glyoxylate aminotransferase family protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20319.38 Da        Isoelectric Point: 5.0019

>NTDB_id=631148 LPH35_RS05235 WP_039046679.1 1158649..1159209(-) (ssb) [Plesiomonas shigelloides strain 7A]
MARGGINKVILIGNLGQDPEVRYMPNGNAVANISIATSESWRDKNTGEQKEMTEWHRVVLYRRLAEVAGEYLKKGAKVYI
EGKLRTRKWQDQNGQERYSTEIQADEMQMLDSRGGMGAPAGQSQGGWGQPQQPQNQGFAPQQSQGNYGNAPAQGGYANNT
PNAAPANNAGFGSAEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=631148 LPH35_RS05235 WP_039046679.1 1158649..1159209(-) (ssb) [Plesiomonas shigelloides strain 7A]
ATGGCCAGAGGTGGCATTAACAAAGTTATCCTGATCGGTAATTTGGGGCAGGACCCTGAAGTACGCTACATGCCGAACGG
TAATGCTGTCGCTAATATCAGCATCGCGACCTCTGAAAGCTGGCGCGACAAGAATACCGGCGAGCAAAAAGAGATGACCG
AATGGCACCGTGTTGTGCTGTATCGTCGTCTGGCAGAAGTGGCGGGTGAATACCTGAAGAAAGGTGCCAAGGTTTACATT
GAAGGTAAACTGCGTACTCGTAAATGGCAGGATCAGAACGGCCAAGAGCGTTACAGCACCGAAATCCAAGCCGATGAGAT
GCAAATGCTGGATTCCCGTGGCGGCATGGGCGCACCGGCAGGCCAATCACAAGGCGGTTGGGGTCAACCACAGCAGCCAC
AAAACCAAGGGTTTGCTCCACAGCAGTCCCAAGGTAACTACGGCAATGCCCCAGCGCAAGGCGGCTACGCCAACAATACC
CCGAATGCGGCACCAGCGAACAACGCCGGTTTCGGTAGCGCTGAGCCACCAATGGATTTTGATGACGACATTCCATTTTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9B0G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.307

100

0.656
  ssb Glaesserella parasuis strain SC1401

57.979

100

0.586
  ssb Neisseria meningitidis MC58

48.634

98.387

0.478
  ssb Neisseria gonorrhoeae MS11

48.634

98.387

0.478