Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LPH62_RS03560 Genome accession   NZ_CP087693
Coordinates   849065..850123 (+) Length   352 a.a.
NCBI ID   WP_038270526.1    Uniprot ID   Z9JKZ2
Organism   Xylella taiwanensis strain PLS429     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 844065..855123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH62_RS03555 (LPH62_03555) - 846394..848823 (-) 2430 WP_038270527.1 penicillin-binding protein 1A -
  LPH62_RS03560 (LPH62_03560) pilM 849065..850123 (+) 1059 WP_038270526.1 type IV pilus biogenesis protein PilM Machinery gene
  LPH62_RS03565 (LPH62_03565) - 850123..850800 (+) 678 WP_038270525.1 PilN domain-containing protein -
  LPH62_RS03570 (LPH62_03570) - 850800..851468 (+) 669 WP_038270524.1 type 4a pilus biogenesis protein PilO -
  LPH62_RS03575 (LPH62_03575) - 851465..851995 (+) 531 WP_038270523.1 pilus assembly protein PilP -
  LPH62_RS03580 (LPH62_03580) - 852019..853887 (+) 1869 WP_171898060.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37749.43 Da        Isoelectric Point: 4.7506

>NTDB_id=630975 LPH62_RS03560 WP_038270526.1 849065..850123(+) (pilM) [Xylella taiwanensis strain PLS429]
MRLISKKQSMLVGVDISSTSVKLLQLSRSGTRFKVEHYAVEPLPPNAVSEKDIAEVELVGEAIRRAVSRSGTKTKFAAAA
VAGSAVITKLIPMPAGLDEHDLEAQIELEATNYIPYPINEVSLDFEVLGPVPNNTEMVQVLLAASRSENVELRQSALELG
GLTAKIIDVEAFAVENAFSLIAEELPVGSKALVALIDIGATMTTLNVLHSGRSLYSREQIFGGKQLTDEVAHRYGMTYEE
AGQAKRQGGLPQSYEVEVLEPFKEAVVQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAGLPAMVEERLGVATVVANPLA
QMTLGAKVQAHTLAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=630975 LPH62_RS03560 WP_038270526.1 849065..850123(+) (pilM) [Xylella taiwanensis strain PLS429]
GTGCGGCTTATTTCCAAAAAACAGTCGATGCTGGTTGGTGTTGACATTAGTTCAACTTCAGTCAAGCTCTTGCAGCTTTC
CCGTAGCGGTACCCGTTTCAAGGTGGAACACTATGCTGTGGAGCCTCTACCGCCGAATGCGGTCAGCGAGAAGGACATCG
CTGAAGTCGAGCTGGTCGGTGAGGCAATTCGTCGTGCTGTGAGCCGTTCTGGTACCAAGACCAAGTTTGCCGCTGCTGCG
GTCGCTGGTTCGGCGGTAATCACCAAGCTGATACCAATGCCTGCTGGTCTGGACGAGCACGATTTGGAGGCTCAGATAGA
ATTGGAGGCTACTAATTACATCCCGTACCCTATTAATGAGGTTAGCCTCGATTTTGAGGTGCTTGGTCCGGTTCCGAACA
ATACAGAGATGGTCCAGGTCTTGCTGGCTGCTTCTCGTTCGGAGAATGTCGAATTGCGTCAATCTGCATTGGAATTGGGT
GGGCTCACTGCCAAGATCATTGACGTGGAGGCTTTCGCGGTCGAGAACGCCTTCTCACTTATCGCCGAAGAATTGCCGGT
TGGAAGTAAAGCGTTGGTTGCACTGATCGACATCGGTGCAACGATGACTACGCTTAATGTGCTGCATAGCGGTCGCAGCT
TGTACAGTCGTGAGCAGATATTCGGTGGTAAGCAGCTTACTGACGAAGTGGCGCATCGCTACGGGATGACCTACGAGGAA
GCTGGTCAAGCCAAGCGTCAGGGAGGTTTGCCACAGAGCTATGAGGTTGAGGTACTGGAACCCTTTAAGGAAGCTGTGGT
CCAGCAGATCAGTCGCTTATTGCAGTTTTTCTATGCTGGCAGTGAGTACAACCGAGTCGATTGCATCGTGTTGGCGGGAG
GTTGTGCTGTGATTGCTGGATTGCCAGCTATGGTTGAAGAACGGTTGGGCGTAGCCACCGTGGTGGCTAATCCACTCGCG
CAGATGACTTTGGGGGCAAAAGTACAAGCACACACACTGGCTCAAGATGCGCCTGCCCTAATGATTGCTACTGGTCTGGC
TCTGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Z9JKZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.284

100

0.503
  comM Acinetobacter nosocomialis M2

50.284

100

0.503
  comM Acinetobacter baylyi ADP1

49.148

100

0.491
  pilM Legionella pneumophila strain ERS1305867

46

99.432

0.457