Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LO769_RS08585 Genome accession   NZ_CP087600
Coordinates   1726796..1727785 (-) Length   329 a.a.
NCBI ID   WP_252172288.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IBB109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721796..1732785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO769_RS08570 (LO769_08565) - 1723162..1724088 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LO769_RS08575 (LO769_08570) - 1724242..1724925 (-) 684 WP_010906108.1 O-methyltransferase -
  LO769_RS08580 (LO769_08575) pepF 1724928..1726733 (-) 1806 WP_252172287.1 oligoendopeptidase F Regulator
  LO769_RS08585 (LO769_08580) coiA 1726796..1727785 (-) 990 WP_252172288.1 competence protein CoiA Machinery gene
  LO769_RS08590 (LO769_08585) - 1727859..1728944 (-) 1086 WP_003130405.1 YdcF family protein -
  LO769_RS08595 (LO769_08590) - 1729106..1729954 (-) 849 WP_252172289.1 alpha/beta hydrolase -
  LO769_RS08600 (LO769_08595) - 1730146..1731567 (-) 1422 WP_003130403.1 solute carrier family 23 protein -
  LO769_RS08605 (LO769_08600) - 1731874..1732710 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39424.95 Da        Isoelectric Point: 8.5239

>NTDB_id=630364 LO769_RS08585 WP_252172288.1 1726796..1727785(-) (coiA) [Lactococcus lactis subsp. lactis strain IBB109]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLRLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDTIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKIQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYSPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=630364 LO769_RS08585 WP_252172288.1 1726796..1727785(-) (coiA) [Lactococcus lactis subsp. lactis strain IBB109]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTAAGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATACAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAAATTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATTCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.233

99.088

0.736
  coiA Streptococcus pneumoniae TIGR4

42.857

97.872

0.419
  coiA Streptococcus pneumoniae Rx1

42.857

97.872

0.419
  coiA Streptococcus pneumoniae D39

42.857

97.872

0.419
  coiA Streptococcus pneumoniae R6

42.857

97.872

0.419
  coiA Streptococcus mitis NCTC 12261

42.633

96.96

0.413