Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOS78_RS12520 Genome accession   NZ_CP087598
Coordinates   1097108..1097608 (-) Length   166 a.a.
NCBI ID   WP_028712168.1    Uniprot ID   -
Organism   Paracoccus sp. MA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1092108..1102608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOS78_RS12500 (LOS78_12500) - 1092815..1093519 (+) 705 WP_028712172.1 ABC transporter ATP-binding protein -
  LOS78_RS12505 (LOS78_12505) - 1093529..1094788 (+) 1260 WP_230378431.1 Zn-dependent hydrolase -
  LOS78_RS12510 (LOS78_12510) - 1094785..1096269 (+) 1485 WP_230378432.1 M81 family metallopeptidase -
  LOS78_RS12515 (LOS78_12515) - 1096278..1097048 (+) 771 WP_230378433.1 FadR/GntR family transcriptional regulator -
  LOS78_RS12520 (LOS78_12520) ssb 1097108..1097608 (-) 501 WP_028712168.1 single-stranded DNA-binding protein Machinery gene
  LOS78_RS12525 (LOS78_12525) - 1097823..1098470 (+) 648 WP_028712167.1 lytic transglycosylase domain-containing protein -
  LOS78_RS12530 (LOS78_12530) - 1098529..1099098 (-) 570 WP_198019317.1 YSC84-related protein -
  LOS78_RS12535 (LOS78_12535) hemB 1099187..1100185 (-) 999 WP_230378434.1 porphobilinogen synthase -
  LOS78_RS12540 (LOS78_12540) - 1100347..1100913 (+) 567 WP_230378435.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17804.43 Da        Isoelectric Point: 6.4883

>NTDB_id=630340 LOS78_RS12520 WP_028712168.1 1097108..1097608(-) (ssb) [Paracoccus sp. MA]
MAGSVNKVILVGNLGQDPEVRTFPSGGKVANLRIATSETWKDRNTGERRERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQSGNDRYSTEVALRPFRSELHMLDGRGAGGGGRDEGYGGGSYGGGGYGGGASSGGSASGGGQSQNRPEF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=630340 LOS78_RS12520 WP_028712168.1 1097108..1097608(-) (ssb) [Paracoccus sp. MA]
ATGGCAGGCAGCGTGAACAAGGTGATCCTGGTCGGCAATCTGGGTCAGGACCCGGAAGTCCGCACCTTCCCCAGCGGCGG
CAAGGTTGCCAACCTGCGCATCGCGACGTCCGAAACCTGGAAGGACCGCAATACCGGCGAGCGGCGCGAGCGCACGGAAT
GGCATACGGTGGCGATCTATTCCGAGCCGCTGGTCCGCGTGGCCGAGCAATATCTGAAAAAGGGCTCCAAGGTTTATGTC
GAGGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGAGCGGCAACGACCGCTATTCGACCGAGGTCGCCCTGCGCCCCTT
CCGCAGCGAGCTGCACATGCTTGACGGCCGCGGCGCCGGCGGCGGTGGCCGCGACGAGGGCTATGGCGGCGGCAGCTACG
GGGGCGGCGGCTATGGCGGCGGCGCCTCCTCGGGCGGCAGCGCGTCCGGCGGCGGGCAGTCGCAGAACCGTCCCGAATTC
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.548
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.53
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.452
  ssb Neisseria meningitidis MC58

41.341

100

0.446