Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IUZ65_RS14995 Genome accession   NZ_CP087590
Coordinates   3291253..3291822 (-) Length   189 a.a.
NCBI ID   WP_195704482.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3286253..3296822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS14975 (IUZ65_014975) - 3286536..3286871 (-) 336 WP_231363592.1 MSHA biogenesis protein MshK -
  IUZ65_RS14980 (IUZ65_014980) - 3286864..3287505 (-) 642 WP_195704479.1 MSHA biogenesis protein MshJ -
  IUZ65_RS14985 (IUZ65_014985) - 3287505..3288971 (-) 1467 WP_195704480.1 MSHA biogenesis protein MshI -
  IUZ65_RS14990 (IUZ65_014990) csrD 3288990..3290981 (-) 1992 WP_195704481.1 RNase E specificity factor CsrD -
  IUZ65_RS14995 (IUZ65_014995) ssb 3291253..3291822 (-) 570 WP_195704482.1 single-stranded DNA-binding protein Machinery gene
  IUZ65_RS15000 (IUZ65_015000) - 3292127..3292762 (+) 636 WP_195704483.1 LuxR C-terminal-related transcriptional regulator -
  IUZ65_RS15005 (IUZ65_015005) galU 3292866..3293741 (+) 876 WP_195704484.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IUZ65_RS15010 (IUZ65_015010) uvrA 3293885..3296719 (+) 2835 WP_195704485.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20532.67 Da        Isoelectric Point: 5.2358

>NTDB_id=630237 IUZ65_RS14995 WP_195704482.1 3291253..3291822(-) (ssb) [Vibrio sp. VB16]
MASRGINKVILVGNLGGDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHKVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGQGGAPASGGQGQQSQQGGWGQPQQPVQQAQAPQQQAAPQRA
PQQAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=630237 IUZ65_RS14995 WP_195704482.1 3291253..3291822(-) (ssb) [Vibrio sp. VB16]
ATGGCGAGCCGTGGAATTAATAAGGTTATTTTGGTTGGCAACTTAGGTGGCGATCCAGAAGTTCGATATATGCCAAGCGG
CGGTGCAGTGGCGAATATTACTATTGCTACTTCAGAAAGCTGGCGTGACAAGGCGACTGGAGAGCAGCGCGAAAAAACGG
AATGGCACAAAGTTGCTTTATTCGGAAAATTGGCAGAAGTTGCAGGCGAGTATCTACGTAAAGGCTCTCAGGTTTATATT
GAAGGTCAATTGCAGACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGTTATACAACAGAAGTGGTAGTCCAAGGCTT
CAATGGTGTAATGCAGATGCTTGGTGGTCGCCAAGGTCAAGGTGGTGCTCCAGCATCAGGAGGCCAAGGGCAACAATCTC
AACAAGGAGGGTGGGGGCAACCTCAGCAACCTGTTCAGCAAGCACAAGCACCGCAACAACAAGCGGCACCTCAACGTGCG
CCTCAGCAAGCACCTCAACAAGCGCCTCAGCAGGCACAACCGCAATATAATGAACCACCTATGGACTTTGATGACGATAT
TCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.836

100

0.788
  ssb Glaesserella parasuis strain SC1401

53.191

99.471

0.529
  ssb Neisseria gonorrhoeae MS11

48.128

98.942

0.476
  ssb Neisseria meningitidis MC58

47.568

97.884

0.466