Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   IUZ65_RS07595 Genome accession   NZ_CP087590
Coordinates   1647844..1648431 (+) Length   195 a.a.
NCBI ID   WP_195703161.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642844..1653431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS07575 (IUZ65_007575) panP 1643161..1644804 (-) 1644 WP_195703157.1 putative pyridoxal-dependent aspartate 1-decarboxylase -
  IUZ65_RS07580 (IUZ65_007580) - 1644934..1645446 (-) 513 WP_195703158.1 hypothetical protein -
  IUZ65_RS07585 (IUZ65_007585) - 1645602..1646507 (-) 906 WP_195703159.1 lysine exporter LysO family protein -
  IUZ65_RS07590 (IUZ65_007590) - 1646531..1647469 (-) 939 WP_195703160.1 HDOD domain-containing protein -
  IUZ65_RS07595 (IUZ65_007595) tfoX 1647844..1648431 (+) 588 WP_195703161.1 TfoX/Sxy family DNA transformation protein Regulator
  IUZ65_RS07600 (IUZ65_007600) - 1648622..1649647 (+) 1026 WP_195703162.1 ABC transporter permease subunit -
  IUZ65_RS07605 (IUZ65_007605) - 1649652..1650695 (+) 1044 WP_195705039.1 ABC transporter permease subunit -
  IUZ65_RS07610 (IUZ65_007610) - 1650721..1652553 (+) 1833 WP_195703163.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22315.81 Da        Isoelectric Point: 10.3077

>NTDB_id=630226 IUZ65_RS07595 WP_195703161.1 1647844..1648431(+) (tfoX) [Vibrio sp. VB16]
MNNSDFYGYAGKFGVFHKHSMFGGIGLFIQDAMFVLITGDALYLRGGGHLDADLRALGCKRYRHVKKQAVVTVNYYDIST
LYNKRYLRLDGLIERSIRMSIANKVYRHSAESKRLRDLPNMRLTLERMVKKAGISDVSSFMEIGAAEVYKKVRRQYGENT
DTNLLWKFAGAVEGTHWSLLSNKTKKELKRTCDLS

Nucleotide


Download         Length: 588 bp        

>NTDB_id=630226 IUZ65_RS07595 WP_195703161.1 1647844..1648431(+) (tfoX) [Vibrio sp. VB16]
ATGAATAATTCAGACTTTTATGGTTATGCAGGAAAATTTGGTGTTTTTCATAAACACTCTATGTTTGGTGGTATAGGGCT
ATTTATTCAAGACGCTATGTTTGTTTTGATTACTGGTGATGCTCTGTATTTAAGAGGAGGAGGACATCTAGACGCGGACC
TACGTGCCTTGGGCTGTAAACGGTACAGACATGTTAAAAAACAAGCCGTTGTTACGGTCAACTATTATGATATATCAACA
CTTTATAACAAAAGGTATTTAAGGCTTGATGGTCTTATTGAACGTTCAATTCGAATGTCGATTGCTAATAAGGTATATCG
ACACTCCGCCGAGAGTAAACGGCTAAGAGACTTACCTAATATGCGATTAACCTTGGAGAGGATGGTTAAGAAAGCGGGTA
TCTCTGATGTCAGTTCATTTATGGAGATTGGTGCTGCTGAAGTATATAAAAAGGTGCGGCGTCAATATGGTGAAAATACA
GATACTAACCTGTTGTGGAAGTTTGCTGGTGCAGTTGAAGGTACTCACTGGAGCTTATTGAGCAATAAAACGAAAAAGGA
ATTGAAACGTACTTGTGACCTCTCTTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(12-97)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

57.812

98.462

0.569
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

57.812

98.462

0.569
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

57.812

98.462

0.569
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

57.812

98.462

0.569
  tfoX Vibrio cholerae strain A1552

57.812

98.462

0.569
  tfoX Vibrio parahaemolyticus RIMD 2210633

52.85

98.974

0.523
  tfoX Vibrio campbellii strain DS40M4

52.332

98.974

0.518
  tfoX Aliivibrio fischeri ES114

51.913

93.846

0.487