Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LMY39_RS02655 Genome accession   NZ_CP087584
Coordinates   617234..617758 (+) Length   174 a.a.
NCBI ID   WP_042848855.1    Uniprot ID   A0AA97CN96
Organism   Providencia rettgeri strain L1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 612234..622758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMY39_RS02650 (LMY39_02650) uvrA 613939..616773 (-) 2835 WP_042848856.1 excinuclease ABC subunit UvrA -
  LMY39_RS02655 (LMY39_02655) ssb 617234..617758 (+) 525 WP_042848855.1 single-stranded DNA-binding protein Machinery gene
  LMY39_RS02660 (LMY39_02660) - 618004..618411 (-) 408 WP_042848854.1 helix-turn-helix domain-containing protein -
  LMY39_RS02665 (LMY39_02665) - 618650..619822 (-) 1173 WP_042848852.1 MFS transporter -
  LMY39_RS02670 (LMY39_02670) ivbL 620169..620258 (+) 90 WP_105880933.1 ilvB operon leader peptide IvbL -
  LMY39_RS02675 (LMY39_02675) ilvB 620362..622059 (+) 1698 WP_042848851.1 acetolactate synthase large subunit -
  LMY39_RS02680 (LMY39_02680) ilvN 622062..622346 (+) 285 WP_042848850.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18726.71 Da        Isoelectric Point: 4.9468

>NTDB_id=630181 LMY39_RS02655 WP_042848855.1 617234..617758(+) (ssb) [Providencia rettgeri strain L1]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDSSSQGQGGQGGWGQPQQPQAQAAQQFSGGGAPARSQAPAPQ
TNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=630181 LMY39_RS02655 WP_042848855.1 617234..617758(+) (ssb) [Providencia rettgeri strain L1]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
TGGGGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGCGATAAGCAAACCGGCGAGATGCGTGAAAAAACAG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCTGAGGTTGCGGGTGAATATTTAAAAAAAGGTTCACAAGTCTACATC
GAAGGTTCTTTGCAAACCCGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACCACTGAAGTTGTTGTTAATATCGG
TGGTTCAATGCAAATGCTAGGTGGTCGTGGTGGTGATTCGTCATCACAAGGGCAAGGCGGTCAGGGGGGTTGGGGTCAGC
CTCAGCAGCCACAAGCTCAAGCTGCTCAACAATTTAGTGGCGGTGGTGCGCCAGCTCGTTCACAAGCGCCAGCACCACAA
ACTAATGAGCCACCAATGGATTTCGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.271

100

0.741
  ssb Glaesserella parasuis strain SC1401

58.065

100

0.621
  ssb Neisseria meningitidis MC58

48.315

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.494