Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4P55_RS25365 Genome accession   NZ_CP104408
Coordinates   5557595..5558122 (-) Length   175 a.a.
NCBI ID   WP_049711300.1    Uniprot ID   A0A0H5ATZ6
Organism   Pseudomonas fluorescens strain Ant01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5552595..5563122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS25340 (N4P55_25355) - 5553080..5553835 (-) 756 WP_262666369.1 alpha/beta hydrolase family protein -
  N4P55_RS25345 (N4P55_25360) - 5553825..5554934 (-) 1110 WP_262666370.1 DUF3182 family protein -
  N4P55_RS25350 (N4P55_25365) - 5555172..5555735 (+) 564 WP_064454349.1 cysteine hydrolase family protein -
  N4P55_RS25355 (N4P55_25370) tam 5555757..5556518 (-) 762 WP_064454350.1 trans-aconitate 2-methyltransferase -
  N4P55_RS25360 (N4P55_25375) - 5556620..5557528 (+) 909 WP_262666371.1 LysR family transcriptional regulator -
  N4P55_RS25365 (N4P55_25380) ssb 5557595..5558122 (-) 528 WP_049711300.1 single-stranded DNA-binding protein Machinery gene
  N4P55_RS25370 (N4P55_25385) - 5558132..5559526 (-) 1395 WP_064454352.1 MFS transporter -
  N4P55_RS25375 (N4P55_25390) uvrA 5559705..5562539 (+) 2835 WP_259763377.1 excinuclease ABC subunit UvrA Machinery gene
  N4P55_RS25380 (N4P55_25395) bfr 5562605..5563069 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19410.58 Da        Isoelectric Point: 5.9366

>NTDB_id=629353 N4P55_RS25365 WP_049711300.1 5557595..5558122(-) (ssb) [Pseudomonas fluorescens strain Ant01]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGEQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=629353 N4P55_RS25365 WP_049711300.1 5557595..5558122(-) (ssb) [Pseudomonas fluorescens strain Ant01]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGAGCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAATCGCGTCAGGCGCCGCCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H5ATZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

49.444

100

0.509
  ssb Neisseria gonorrhoeae MS11

49.444

100

0.509