Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   LOZ87_RS16780 Genome accession   NZ_CP087391
Coordinates   3411958..3413163 (-) Length   401 a.a.
NCBI ID   WP_039063726.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3406958..3418163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS16750 (LOZ87_16750) - 3407223..3407642 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LOZ87_RS16755 (LOZ87_16755) comFC 3407716..3408405 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  LOZ87_RS16760 (LOZ87_16760) - 3408411..3408695 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  LOZ87_RS16765 (LOZ87_16765) comFA 3408753..3410138 (-) 1386 WP_039063725.1 DEAD/DEAH box helicase Machinery gene
  LOZ87_RS16770 (LOZ87_16770) - 3410246..3411094 (-) 849 WP_007407483.1 DegV family protein -
  LOZ87_RS16775 (LOZ87_16775) degU 3411192..3411881 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LOZ87_RS16780 (LOZ87_16780) degS 3411958..3413163 (-) 1206 WP_039063726.1 sensor histidine kinase Regulator
  LOZ87_RS16785 (LOZ87_16785) - 3413386..3414033 (+) 648 WP_007407485.1 YigZ family protein -
  LOZ87_RS16790 (LOZ87_16790) - 3414038..3415258 (+) 1221 WP_039063727.1 LCP family protein -
  LOZ87_RS16795 (LOZ87_16795) - 3415357..3416433 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  LOZ87_RS16800 (LOZ87_16800) tuaH 3416566..3417762 (-) 1197 WP_039063728.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 46741.74 Da        Isoelectric Point: 7.5123

>NTDB_id=629301 LOZ87_RS16780 WP_039063726.1 3411958..3413163(-) (degS) [Bacillus amyloliquefaciens strain ZF57]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRNLR
QNVRNALYEVRRIIYDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNAL
KHSESEEITVKVEVTADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLG
L

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=629301 LOZ87_RS16780 WP_039063726.1 3411958..3413163(-) (degS) [Bacillus amyloliquefaciens strain ZF57]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAGCAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCTTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAATCTGCGG
CAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATATATGATTTAAGACCGATGGCATTGGACGATCTCGGGCT
GATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATACAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAG
ACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGCTTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTC
AAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTAACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGG
AAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAAGTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATC
TGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTGGGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGC
CTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(305-398)

Histidine kinase (HisKA_3)

(180-261)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

92.231

99.501

0.918