Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LOZ87_RS16755 Genome accession   NZ_CP087391
Coordinates   3407716..3408405 (-) Length   229 a.a.
NCBI ID   WP_198161198.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3402716..3413405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS16720 (LOZ87_16720) fliW 3402806..3403237 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  LOZ87_RS16725 (LOZ87_16725) - 3403267..3403836 (-) 570 WP_007407476.1 DUF6470 family protein -
  LOZ87_RS16730 (LOZ87_16730) flgL 3403928..3404845 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LOZ87_RS16735 (LOZ87_16735) flgK 3404857..3406374 (-) 1518 WP_039063717.1 flagellar hook-associated protein FlgK -
  LOZ87_RS16740 (LOZ87_16740) - 3406390..3406872 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LOZ87_RS16745 (LOZ87_16745) flgM 3406887..3407153 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LOZ87_RS16750 (LOZ87_16750) - 3407223..3407642 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LOZ87_RS16755 (LOZ87_16755) comFC 3407716..3408405 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  LOZ87_RS16760 (LOZ87_16760) - 3408411..3408695 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  LOZ87_RS16765 (LOZ87_16765) comFA 3408753..3410138 (-) 1386 WP_039063725.1 DEAD/DEAH box helicase Machinery gene
  LOZ87_RS16770 (LOZ87_16770) - 3410246..3411094 (-) 849 WP_007407483.1 DegV family protein -
  LOZ87_RS16775 (LOZ87_16775) degU 3411192..3411881 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LOZ87_RS16780 (LOZ87_16780) degS 3411958..3413163 (-) 1206 WP_039063726.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25215.80 Da        Isoelectric Point: 8.0779

>NTDB_id=629298 LOZ87_RS16755 WP_198161198.1 3407716..3408405(-) (comFC) [Bacillus amyloliquefaciens strain ZF57]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=629298 LOZ87_RS16755 WP_198161198.1 3407716..3408405(-) (comFC) [Bacillus amyloliquefaciens strain ZF57]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTATTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGATAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598