Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LOZ87_RS16775 Genome accession   NZ_CP087391
Coordinates   3411192..3411881 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3406192..3416881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS16740 (LOZ87_16740) - 3406390..3406872 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LOZ87_RS16745 (LOZ87_16745) flgM 3406887..3407153 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LOZ87_RS16750 (LOZ87_16750) - 3407223..3407642 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LOZ87_RS16755 (LOZ87_16755) comFC 3407716..3408405 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  LOZ87_RS16760 (LOZ87_16760) - 3408411..3408695 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  LOZ87_RS16765 (LOZ87_16765) comFA 3408753..3410138 (-) 1386 WP_039063725.1 DEAD/DEAH box helicase Machinery gene
  LOZ87_RS16770 (LOZ87_16770) - 3410246..3411094 (-) 849 WP_007407483.1 DegV family protein -
  LOZ87_RS16775 (LOZ87_16775) degU 3411192..3411881 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LOZ87_RS16780 (LOZ87_16780) degS 3411958..3413163 (-) 1206 WP_039063726.1 sensor histidine kinase Regulator
  LOZ87_RS16785 (LOZ87_16785) - 3413386..3414033 (+) 648 WP_007407485.1 YigZ family protein -
  LOZ87_RS16790 (LOZ87_16790) - 3414038..3415258 (+) 1221 WP_039063727.1 LCP family protein -
  LOZ87_RS16795 (LOZ87_16795) - 3415357..3416433 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=629300 LOZ87_RS16775 WP_003219701.1 3411192..3411881(-) (degU) [Bacillus amyloliquefaciens strain ZF57]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=629300 LOZ87_RS16775 WP_003219701.1 3411192..3411881(-) (degU) [Bacillus amyloliquefaciens strain ZF57]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACTGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1