NTDB

Overview

Name	comGA	Type	Machinery gene
Locus tag	LOZ87_RS11780	Genome accession	NZ_CP087391
Coordinates	2439709..2440779 (-)	Length	356 a.a.
NCBI ID	WP_003153083.1	Uniprot ID	-
Organism	Bacillus amyloliquefaciens strain ZF57
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2434709..2445779

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOZ87_RS11730 (LOZ87_11730)	sipW	2434769..2435353 (-)	585	WP_007408328.1	signal peptidase I SipW	-
LOZ87_RS11735 (LOZ87_11735)	tapA	2435325..2435996 (-)	672	WP_020954230.1	amyloid fiber anchoring/assembly protein TapA	-
LOZ87_RS11740 (LOZ87_11740)	-	2436255..2436584 (+)	330	WP_020954231.1	DUF3889 domain-containing protein	-
LOZ87_RS11745 (LOZ87_11745)	-	2436624..2436803 (-)	180	WP_003153093.1	YqzE family protein	-
LOZ87_RS11750 (LOZ87_11750)	comGG	2436860..2437237 (-)	378	WP_039063315.1	competence type IV pilus minor pilin ComGG	-
LOZ87_RS11755 (LOZ87_11755)	comGF	2437238..2437738 (-)	501	WP_258038902.1	competence type IV pilus minor pilin ComGF	-
LOZ87_RS11760 (LOZ87_11760)	comGE	2437647..2437961 (-)	315	WP_012117982.1	competence type IV pilus minor pilin ComGE	-
LOZ87_RS11765 (LOZ87_11765)	comGD	2437945..2438382 (-)	438	WP_007408322.1	competence type IV pilus minor pilin ComGD	Machinery gene
LOZ87_RS11770 (LOZ87_11770)	comGC	2438372..2438680 (-)	309	WP_003153087.1	competence type IV pilus major pilin ComGC	Machinery gene
LOZ87_RS11775 (LOZ87_11775)	comGB	2438685..2439722 (-)	1038	WP_039063317.1	competence type IV pilus assembly protein ComGB	Machinery gene
LOZ87_RS11780 (LOZ87_11780)	comGA	2439709..2440779 (-)	1071	WP_003153083.1	competence type IV pilus ATPase ComGA	Machinery gene
LOZ87_RS11785 (LOZ87_11785)	-	2440972..2441922 (-)	951	WP_007408319.1	magnesium transporter CorA family protein	-
LOZ87_RS11790 (LOZ87_11790)	-	2442068..2443369 (+)	1302	WP_039063318.1	hemolysin family protein	-
LOZ87_RS11795 (LOZ87_11795)	-	2443407..2444237 (-)	831	WP_015240214.1	STAS domain-containing protein	-
LOZ87_RS11805 (LOZ87_11805)	-	2444444..2444824 (-)	381	WP_003153079.1	Spx/MgsR family RNA polymerase-binding regulatory protein	-
LOZ87_RS11810 (LOZ87_11810)	-	2445061..2445306 (+)	246	WP_003153078.1	DUF2626 domain-containing protein	-

Sequence

Protein

Download Length: 356 a.a. Molecular weight: 40529.85 Da Isoelectric Point: 9.4729

                                >NTDB_id=629279 LOZ87_RS11780 WP_003153083.1 2439709..2440779(-) (comGA) [Bacillus amyloliquefaciens strain ZF57]

MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS

LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY

AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH

TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE

HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide

Download Length: 1071 bp

                                >NTDB_id=629279 LOZ87_RS11780 WP_003153083.1 2439709..2440779(-) (comGA) [Bacillus amyloliquefaciens strain ZF57]

GTGAAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC

GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG

TAAGGCTAATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT

CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCCTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT

TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA

AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT

GCAAAAAGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA

GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG

GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT

ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC

CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA

GACAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG

CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA

CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGA	Bacillus subtilis subsp. subtilis str. 168	82.022	100	0.82
pilB	Glaesserella parasuis strain SC1401	38.793	97.753	0.379
pilF	Thermus thermophilus HB27	37.892	98.596	0.374

Detailed information NTG0629279