Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LOZ87_RS11775 Genome accession   NZ_CP087391
Coordinates   2438685..2439722 (-) Length   345 a.a.
NCBI ID   WP_039063317.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2433685..2444722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS11725 (LOZ87_11725) tasA 2433919..2434704 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  LOZ87_RS11730 (LOZ87_11730) sipW 2434769..2435353 (-) 585 WP_007408328.1 signal peptidase I SipW -
  LOZ87_RS11735 (LOZ87_11735) tapA 2435325..2435996 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  LOZ87_RS11740 (LOZ87_11740) - 2436255..2436584 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  LOZ87_RS11745 (LOZ87_11745) - 2436624..2436803 (-) 180 WP_003153093.1 YqzE family protein -
  LOZ87_RS11750 (LOZ87_11750) comGG 2436860..2437237 (-) 378 WP_039063315.1 competence type IV pilus minor pilin ComGG -
  LOZ87_RS11755 (LOZ87_11755) comGF 2437238..2437738 (-) 501 WP_258038902.1 competence type IV pilus minor pilin ComGF -
  LOZ87_RS11760 (LOZ87_11760) comGE 2437647..2437961 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  LOZ87_RS11765 (LOZ87_11765) comGD 2437945..2438382 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  LOZ87_RS11770 (LOZ87_11770) comGC 2438372..2438680 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  LOZ87_RS11775 (LOZ87_11775) comGB 2438685..2439722 (-) 1038 WP_039063317.1 competence type IV pilus assembly protein ComGB Machinery gene
  LOZ87_RS11780 (LOZ87_11780) comGA 2439709..2440779 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  LOZ87_RS11785 (LOZ87_11785) - 2440972..2441922 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  LOZ87_RS11790 (LOZ87_11790) - 2442068..2443369 (+) 1302 WP_039063318.1 hemolysin family protein -
  LOZ87_RS11795 (LOZ87_11795) - 2443407..2444237 (-) 831 WP_015240214.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39541.78 Da        Isoelectric Point: 9.5038

>NTDB_id=629278 LOZ87_RS11775 WP_039063317.1 2438685..2439722(-) (comGB) [Bacillus amyloliquefaciens strain ZF57]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLQLQLHKRQLAELTDGIRRLREGDAFYQVIEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPVFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGTTAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=629278 LOZ87_RS11775 WP_039063317.1 2438685..2439722(-) (comGB) [Bacillus amyloliquefaciens strain ZF57]
ATGAAGCGGATTAAACGAACCTGGCCCTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGCAACTACAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGATTGAGGCACTGTCTTTCCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGGTGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTACGACTGCTTTCATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAAAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTATCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.325

93.623

0.612