Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LOZ87_RS07295 Genome accession   NZ_CP087391
Coordinates   1383462..1384058 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378462..1389058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS07265 (LOZ87_07265) - 1378676..1379131 (+) 456 WP_007409622.1 flavodoxin -
  LOZ87_RS07270 (LOZ87_07270) dapD 1379213..1379923 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LOZ87_RS07275 (LOZ87_07275) - 1379994..1381118 (+) 1125 WP_032868142.1 N-acetyldiaminopimelate deacetylase -
  LOZ87_RS07280 (LOZ87_07280) - 1381179..1381424 (+) 246 WP_003154596.1 YkuS family protein -
  LOZ87_RS07285 (LOZ87_07285) - 1381458..1382264 (-) 807 WP_038463800.1 mechanosensitive ion channel family protein -
  LOZ87_RS07290 (LOZ87_07290) - 1382553..1383011 (+) 459 WP_039062998.1 TlpA disulfide reductase family protein -
  LOZ87_RS07295 (LOZ87_07295) rok 1383462..1384058 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  LOZ87_RS07300 (LOZ87_07300) - 1384079..1385071 (-) 993 WP_007409627.1 hypothetical protein -
  LOZ87_RS07305 (LOZ87_07305) - 1385217..1385819 (+) 603 WP_020955749.1 molybdenum cofactor guanylyltransferase -
  LOZ87_RS07310 (LOZ87_07310) - 1385871..1386890 (+) 1020 WP_039062999.1 molybdopterin-synthase adenylyltransferase MoeB -
  LOZ87_RS07315 (LOZ87_07315) glp 1386908..1388200 (+) 1293 WP_039063001.1 gephyrin-like molybdotransferase Glp -
  LOZ87_RS07320 (LOZ87_07320) mobB 1388161..1388682 (+) 522 WP_039063003.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=629264 LOZ87_RS07295 WP_003154591.1 1383462..1384058(+) (rok) [Bacillus amyloliquefaciens strain ZF57]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=629264 LOZ87_RS07295 WP_003154591.1 1383462..1384058(+) (rok) [Bacillus amyloliquefaciens strain ZF57]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843