Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LOZ87_RS07405 Genome accession   NZ_CP087391
Coordinates   1403958..1404242 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1398958..1409242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS07385 (LOZ87_07385) - 1400201..1401109 (+) 909 WP_039063006.1 ketopantoate reductase family protein -
  LOZ87_RS07390 (LOZ87_07390) - 1401141..1402373 (-) 1233 WP_039063007.1 aminopeptidase -
  LOZ87_RS07395 (LOZ87_07395) - 1402474..1402608 (-) 135 WP_003154559.1 protein YkpC -
  LOZ87_RS07400 (LOZ87_07400) mreBH 1402680..1403687 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  LOZ87_RS07405 (LOZ87_07405) abrB 1403958..1404242 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LOZ87_RS07410 (LOZ87_07410) - 1404415..1405719 (+) 1305 WP_039063008.1 ATP-binding protein -
  LOZ87_RS07415 (LOZ87_07415) - 1405721..1406548 (+) 828 WP_039063009.1 gamma-glutamylcyclotransferase -
  LOZ87_RS07420 (LOZ87_07420) ktrC 1406589..1407254 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LOZ87_RS07425 (LOZ87_07425) ade 1407403..1409136 (+) 1734 WP_039063010.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=629265 LOZ87_RS07405 WP_003154557.1 1403958..1404242(+) (abrB) [Bacillus amyloliquefaciens strain ZF57]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=629265 LOZ87_RS07405 WP_003154557.1 1403958..1404242(+) (abrB) [Bacillus amyloliquefaciens strain ZF57]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543