Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LO774_RS04695 Genome accession   NZ_CP087379
Coordinates   925884..926222 (-) Length   112 a.a.
NCBI ID   WP_006251644.1    Uniprot ID   A0A248ZWT2
Organism   Mannheimia haemolytica strain IMT47952     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 920884..931222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO774_RS04680 (LO774_04680) - 920886..922355 (-) 1470 WP_006250002.1 class I SAM-dependent DNA methyltransferase -
  LO774_RS04685 (LO774_04685) hsdR 922403..924754 (-) 2352 WP_061887089.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  LO774_RS04690 (LO774_04690) asd 924826..925677 (-) 852 WP_153015640.1 archaetidylserine decarboxylase -
  LO774_RS04695 (LO774_04695) comEA/comE1 925884..926222 (-) 339 WP_006251644.1 ComEA family DNA-binding protein Machinery gene
  LO774_RS04700 (LO774_04700) - 926515..927840 (+) 1326 WP_230269096.1 LysM-like peptidoglycan-binding domain-containing protein -
  LO774_RS04705 (LO774_04705) - 927904..928320 (+) 417 WP_006250330.1 MliC family protein -
  LO774_RS04710 (LO774_04710) waaF 928431..929468 (+) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  LO774_RS04715 (LO774_04715) rfaC 929535..930494 (+) 960 WP_006250332.1 lipopolysaccharide heptosyltransferase RfaC -
  LO774_RS04720 (LO774_04720) rpsL 930615..930989 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12111.91 Da        Isoelectric Point: 10.0993

>NTDB_id=629167 LO774_RS04695 WP_006251644.1 925884..926222(-) (comEA/comE1) [Mannheimia haemolytica strain IMT47952]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=629167 LO774_RS04695 WP_006251644.1 925884..926222(-) (comEA/comE1) [Mannheimia haemolytica strain IMT47952]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248ZWT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.292

100

0.598
  comE1/comEA Haemophilus influenzae Rd KW20

52.747

81.25

0.429
  comEA Vibrio cholerae C6706

54.651

76.786

0.42
  comEA Vibrio cholerae strain A1552

54.651

76.786

0.42