Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   N597_RS01870 Genome accession   NC_022582
Coordinates   367085..367744 (-) Length   219 a.a.
NCBI ID   WP_042507437.1    Uniprot ID   A0A3A5Q6F2
Organism   Streptococcus ilei     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362085..372744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS01850 (N597_01910) - 363260..363838 (+) 579 WP_023022436.1 YutD family protein -
  N597_RS01855 (N597_01915) rlmN 363857..364945 (+) 1089 WP_023022438.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  N597_RS01860 (N597_01920) - 364923..365456 (+) 534 WP_023022440.1 VanZ family protein -
  N597_RS01865 (N597_01925) trpB 365891..367078 (+) 1188 WP_023022442.1 tryptophan synthase subunit beta -
  N597_RS01870 cclA/cilC 367085..367744 (-) 660 WP_042507437.1 A24 family peptidase Machinery gene
  N597_RS01875 (N597_01940) - 367897..368424 (+) 528 WP_006596795.1 DNA starvation/stationary phase protection protein -
  N597_RS01880 (N597_01945) - 368548..368766 (+) 219 WP_023022447.1 YqgQ family protein -
  N597_RS01885 (N597_01950) - 368805..369149 (+) 345 WP_042507500.1 rhodanese-like domain-containing protein -
  N597_RS01890 (N597_01955) - 369225..369458 (+) 234 WP_023022451.1 hypothetical protein -
  N597_RS01895 (N597_01960) - 369652..370377 (-) 726 WP_023022453.1 16S rRNA pseudouridine(516) synthase -
  N597_RS01900 (N597_01965) typA 370616..372463 (+) 1848 WP_023022455.1 translational GTPase TypA -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24877.98 Da        Isoelectric Point: 8.0267

>NTDB_id=62898 N597_RS01870 WP_042507437.1 367085..367744(-) (cclA/cilC) [Streptococcus ilei]
MINFYFFTVGSCIASFLGLVIDRFPESSIIRPRSHCDHCQQTLRPLDLIPILSQVLFRFRCRYCQSPLPYWYALFEAWSG
LLFLLCYQGLLPISHLFVLLGSCVLAIYDLRSMEYPLLLWLVLHALCLFFTSPTLLMGVFLFLGVLSAVYSIGIGAGDFL
LLATFSLTLSAVQVLLVMQGASLIGLLVFLLKKEKDRIPFVPCLFLSYQALLFFTIFSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=62898 N597_RS01870 WP_042507437.1 367085..367744(-) (cclA/cilC) [Streptococcus ilei]
ATGATCAACTTTTATTTTTTTACAGTCGGTTCCTGTATTGCCTCCTTTTTAGGACTCGTCATCGACCGCTTTCCAGAAAG
CTCCATCATTCGTCCAAGAAGCCATTGCGACCATTGCCAACAGACCTTGAGACCTCTGGACCTGATTCCTATCCTCTCAC
AAGTCCTCTTTCGATTCCGTTGTCGCTATTGCCAGAGCCCGCTTCCTTATTGGTATGCTCTCTTTGAAGCCTGGTCTGGC
CTCCTTTTTTTGCTGTGCTATCAGGGCCTTCTTCCTATTTCTCATCTTTTCGTTCTGCTTGGTAGTTGTGTTTTGGCCAT
CTACGATTTGCGCTCCATGGAGTATCCGCTTCTCCTCTGGCTGGTGCTCCACGCTCTTTGCCTGTTTTTCACCAGCCCTA
CCCTCTTGATGGGAGTCTTTCTCTTCTTAGGAGTCCTGTCAGCTGTTTACTCCATCGGCATTGGAGCAGGGGACTTTCTC
TTACTAGCTACTTTTTCTTTGACCCTCTCAGCTGTCCAAGTCCTCCTCGTCATGCAAGGGGCTTCCCTCATTGGTCTCCT
GGTCTTCCTCTTAAAAAAAGAAAAAGACCGGATTCCTTTTGTTCCCTGTCTTTTTCTGAGTTATCAGGCTTTACTGTTTT
TTACAATTTTTAGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A5Q6F2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

53.991

97.26

0.525
  cclA/cilC Streptococcus pneumoniae D39

53.991

97.26

0.525
  cclA/cilC Streptococcus pneumoniae R6

53.991

97.26

0.525
  cclA/cilC Streptococcus mitis SK321

53.521

97.26

0.521
  cclA/cilC Streptococcus mitis NCTC 12261

53.052

97.26

0.516
  cclA/cilC Streptococcus pneumoniae TIGR4

54.106

94.521

0.511

Multiple sequence alignment