NTDB

Overview

Name	pilU	Type	Machinery gene
Locus tag	LO011_RS04630	Genome accession	NZ_CP087340
Coordinates	941967..943085 (-)	Length	372 a.a.
NCBI ID	WP_005135736.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain DB008
Function	mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 936967..948085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LO011_RS04600	-	937796..938644 (+)	849	WP_000336554.1	class II glutamine amidotransferase	-
LO011_RS04605	-	938897..939352 (+)	456	WP_000782976.1	bacteriohemerythrin	-
LO011_RS04610	-	939505..940572 (+)	1068	WP_258579635.1	hypothetical protein	-
LO011_RS04615	-	940572..940895 (+)	324	WP_000442590.1	RnfH family protein	-
LO011_RS04620	-	940950..941348 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
LO011_RS04625	fur	941460..941897 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
LO011_RS04630	pilU	941967..943085 (-)	1119	WP_005135736.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LO011_RS04635	pilT	943113..944150 (-)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
LO011_RS04640	-	944277..944969 (+)	693	WP_001108509.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

Download Length: 372 a.a. Molecular weight: 41890.10 Da Isoelectric Point: 6.8288

                                >NTDB_id=628924 LO011_RS04630 WP_005135736.1 941967..943085(-) (pilU) [Acinetobacter baumannii strain DB008]

MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRKEFADTRECNFAIMNREKTA

RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE

DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR

IIHFFESNRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ

ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

Download Length: 1119 bp

                                >NTDB_id=628924 LO011_RS04630 WP_005135736.1 941967..943085(-) (pilU) [Acinetobacter baumannii strain DB008]

ATGGATTTTAATGACCTACTCAACCTGATGGTTGAAAAGAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC

TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAACAGCCTTTCTGGGGAAGTAATTGGTCAACTGTTACATTCCA

TTATGAGTGAAAAACAACGCAAAGAATTTGCAGACACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG

CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCAGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT

TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGTGGCATTATTATTTTCGTAGGTGCGACAG

GTACAGGTAAATCTACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA

GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA

AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT

ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCCAACAACGCCAACCAAGCGCTCGACCGT

ATTATTCACTTTTTTGAAAGTAATCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA

GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT

ACATCCGTAAAGGTGAAATTCATGAAATTAAGGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA

GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG

TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGAAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(34-270)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilU	Acinetobacter baylyi ADP1	75.397	100	0.766
pilU	Pseudomonas stutzeri DSM 10701	68.75	98.925	0.68
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.908	93.011	0.39

Detailed information NTG0628924