Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LO010_RS17520 Genome accession   NZ_CP087335
Coordinates   3642877..3643737 (+) Length   286 a.a.
NCBI ID   WP_001152278.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637877..3648737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS17500 secG 3638482..3638811 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  LO010_RS17505 tpiA 3638824..3639618 (-) 795 WP_000016940.1 triose-phosphate isomerase -
  LO010_RS17510 pilB 3639909..3641621 (+) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO010_RS17515 pilC 3641651..3642877 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  LO010_RS17520 pilD 3642877..3643737 (+) 861 WP_001152278.1 A24 family peptidase Machinery gene
  LO010_RS17525 coaE 3643739..3644335 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  LO010_RS17530 - 3644332..3645246 (-) 915 WP_000075015.1 DMT family transporter -
  LO010_RS17535 rlmB 3645282..3646031 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO010_RS17540 - 3646133..3646459 (-) 327 WP_258580290.1 pyrimidine/purine nucleoside phosphorylase -
  LO010_RS17545 - 3646536..3647846 (-) 1311 WP_002055139.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32056.47 Da        Isoelectric Point: 7.1041

>NTDB_id=628897 LO010_RS17520 WP_001152278.1 3642877..3643737(+) (pilD) [Acinetobacter baumannii strain DB053]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=628897 LO010_RS17520 WP_001152278.1 3642877..3643737(+) (pilD) [Acinetobacter baumannii strain DB053]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

99.301

100

0.993
  pilD Acinetobacter nosocomialis M2

98.951

100

0.99
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.768

94.755

0.5
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441