Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N4267_RS08160 Genome accession   NZ_CP104354
Coordinates   1812075..1812719 (-) Length   214 a.a.
NCBI ID   WP_001890391.1    Uniprot ID   Q9KSP3
Organism   Vibrio cholerae strain PNUSAV001140     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807075..1817719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4267_RS08120 (N4267_08120) - 1807145..1807630 (+) 486 WP_123011446.1 GNAT family N-acetyltransferase -
  N4267_RS08125 (N4267_08125) - 1807627..1808745 (-) 1119 WP_134987020.1 GGDEF domain-containing protein -
  N4267_RS08150 (N4267_08150) pgsA 1809638..1810195 (-) 558 WP_001211977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N4267_RS08155 (N4267_08155) uvrC 1810243..1812075 (-) 1833 WP_134987019.1 excinuclease ABC subunit UvrC -
  N4267_RS08160 (N4267_08160) letA 1812075..1812719 (-) 645 WP_001890391.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  N4267_RS08165 (N4267_08165) - 1813095..1815458 (+) 2364 WP_134987018.1 DNA polymerase II -
  N4267_RS08170 (N4267_08170) - 1815430..1817529 (-) 2100 WP_260812644.1 PTS sugar transporter subunit IIC/EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23751.50 Da        Isoelectric Point: 6.4970

>NTDB_id=628895 N4267_RS08160 WP_001890391.1 1812075..1812719(-) (letA) [Vibrio cholerae strain PNUSAV001140]
MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDIKIIV
LTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFADLSERELQIMLMI
TKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGILDTEKL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=628895 N4267_RS08160 WP_001890391.1 1812075..1812719(-) (letA) [Vibrio cholerae strain PNUSAV001140]
TTGATTAGTGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAAAGTAGCAGGGGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGCCGTACTAACCATGCGGATGTCATTTTAATGG
ATATGAACATGCCGGGTATTGGTGGCTTGGAAGCAACCAAGAAGCTGTTGCGTGTTAATCCGGACATTAAAATTATCGTA
TTGACGGTACATACCGAAAATCCGTTCCCAACCAAAGTGATGCAAGCGGGTGCCGCAGGTTATCTCACGAAGGGCGCGGC
ACCGGATGAAATGGTCAATGCGATCCGTATCGTTCACAGCGGTCAGCGTTACATTTCTCCAGAAATTGCGCAGCAAATGG
CGTTGAGTCAGTTTTCGCCCGCCTCTGAAAATCCGTTTGCTGATCTCTCCGAGCGTGAATTGCAGATCATGTTAATGATC
ACCAAAGGCCAGAAGGTGACGGACATTTCCGAACAGCTCAGTTTGAGCCCGAAAACCGTCAACAGCTACCGCTACCGTTT
GTTCGCCAAGCTGAATATCAACGGTGATGTGGAATTAACCCACTTAGCTATCCGACACGGGATCTTAGATACTGAGAAGT
TATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KSP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.905

98.131

0.509
  letA Legionella pneumophila strain ERS1305867

51.905

98.131

0.509