Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LO010_RS17515 Genome accession   NZ_CP087335
Coordinates   3641651..3642877 (+) Length   408 a.a.
NCBI ID   WP_000279218.1    Uniprot ID   A0A836M511
Organism   Acinetobacter baumannii strain DB053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636651..3647877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS17480 rimP 3637316..3637840 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  LO010_RS17500 secG 3638482..3638811 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  LO010_RS17505 tpiA 3638824..3639618 (-) 795 WP_000016940.1 triose-phosphate isomerase -
  LO010_RS17510 pilB 3639909..3641621 (+) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO010_RS17515 pilC 3641651..3642877 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  LO010_RS17520 pilD 3642877..3643737 (+) 861 WP_001152278.1 A24 family peptidase Machinery gene
  LO010_RS17525 coaE 3643739..3644335 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  LO010_RS17530 - 3644332..3645246 (-) 915 WP_000075015.1 DMT family transporter -
  LO010_RS17535 rlmB 3645282..3646031 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO010_RS17540 - 3646133..3646459 (-) 327 WP_258580290.1 pyrimidine/purine nucleoside phosphorylase -
  LO010_RS17545 - 3646536..3647846 (-) 1311 WP_002055139.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44923.43 Da        Isoelectric Point: 9.9566

>NTDB_id=628896 LO010_RS17515 WP_000279218.1 3641651..3642877(+) (pilC) [Acinetobacter baumannii strain DB053]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=628896 LO010_RS17515 WP_000279218.1 3641651..3642877(+) (pilC) [Acinetobacter baumannii strain DB053]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTAGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGAATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATCATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATCCGGGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTGGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M511

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36