Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LO004_RS02525 Genome accession   NZ_CP087331
Coordinates   530833..531315 (+) Length   160 a.a.
NCBI ID   WP_001046419.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525833..536315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS02515 pilX 526136..526954 (+) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO004_RS02520 pilY1 526966..530820 (+) 3855 WP_000768945.1 PilC/PilY family type IV pilus protein Machinery gene
  LO004_RS02525 pilY2 530833..531315 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  LO004_RS02530 pilE 531312..531737 (+) 426 WP_000788338.1 type IV pilin protein Machinery gene
  LO004_RS02535 rpsP 531884..532135 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO004_RS02540 rimM 532155..532703 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO004_RS02545 trmD 532749..533489 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO004_RS02550 rplS 533697..534065 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO004_RS02555 - 534119..535060 (-) 942 WP_086261923.1 triacylglycerol lipase -
  LO004_RS02560 - 535175..536209 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17547.78 Da        Isoelectric Point: 8.4834

>NTDB_id=628827 LO004_RS02525 WP_001046419.1 530833..531315(+) (pilY2) [Acinetobacter baumannii strain LMG994]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=628827 LO004_RS02525 WP_001046419.1 530833..531315(+) (pilY2) [Acinetobacter baumannii strain LMG994]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCAAATGGGCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

39.535

100

0.425