Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LO004_RS01905 Genome accession   NZ_CP087331
Coordinates   407888..408469 (+) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain LMG994     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 402888..413469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS01880 - 403509..403862 (+) 354 WP_000580165.1 DUF1304 domain-containing protein -
  LO004_RS01885 - 403915..404256 (+) 342 WP_000263329.1 GlpM family protein -
  LO004_RS01890 tenA 404306..404980 (-) 675 WP_000899418.1 thiaminase II -
  LO004_RS01895 - 405243..406325 (+) 1083 WP_000680213.1 DUF475 domain-containing protein -
  LO004_RS01900 - 406472..407836 (+) 1365 WP_000980460.1 MFS transporter -
  LO004_RS01905 ssb 407888..408469 (+) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  LO004_RS01910 - 408510..408833 (-) 324 WP_000082714.1 AzlD domain-containing protein -
  LO004_RS01915 - 408830..409525 (-) 696 WP_025465277.1 AzlC family ABC transporter permease -
  LO004_RS01920 - 409594..410142 (+) 549 WP_000081856.1 helix-turn-helix domain-containing protein -
  LO004_RS01925 - 410448..411890 (+) 1443 WP_000718865.1 amino acid permease -
  LO004_RS01930 - 411955..413454 (-) 1500 WP_001257165.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=628815 LO004_RS01905 WP_001215080.1 407888..408469(+) (ssb) [Acinetobacter baumannii strain LMG994]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=628815 LO004_RS01905 WP_001215080.1 407888..408469(+) (ssb) [Acinetobacter baumannii strain LMG994]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGCGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394