Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LO007_RS16635 Genome accession   NZ_CP087312
Coordinates   3513664..3514404 (-) Length   246 a.a.
NCBI ID   WP_031999622.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3508664..3519404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS16615 aroB 3509206..3510288 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO007_RS16620 aroK 3510317..3510886 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO007_RS16625 pilQ 3510898..3513063 (-) 2166 WP_188137325.1 type IV pilus secretin PilQ family protein Machinery gene
  LO007_RS16630 pilP 3513126..3513653 (-) 528 WP_057049054.1 pilus assembly protein PilP Machinery gene
  LO007_RS16635 pilO 3513664..3514404 (-) 741 WP_031999622.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO007_RS16640 pilN 3514401..3515042 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  LO007_RS16645 pilM 3515042..3516100 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO007_RS16650 ponA 3516262..3518817 (+) 2556 WP_031999621.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27919.68 Da        Isoelectric Point: 4.6475

>NTDB_id=628618 LO007_RS16635 WP_031999622.1 3513664..3514404(-) (pilO) [Acinetobacter baumannii strain OC059]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQENFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQMGNPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=628618 LO007_RS16635 WP_031999622.1 3513664..3514404(-) (pilO) [Acinetobacter baumannii strain OC059]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGAAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAGATGGGCAACCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

98.374

100

0.984
  comO Acinetobacter baylyi ADP1

68.724

98.78

0.679