Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LO007_RS16640 Genome accession   NZ_CP087312
Coordinates   3514401..3515042 (-) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3509401..3520042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS16620 aroK 3510317..3510886 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO007_RS16625 pilQ 3510898..3513063 (-) 2166 WP_188137325.1 type IV pilus secretin PilQ family protein Machinery gene
  LO007_RS16630 pilP 3513126..3513653 (-) 528 WP_057049054.1 pilus assembly protein PilP Machinery gene
  LO007_RS16635 pilO 3513664..3514404 (-) 741 WP_031999622.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO007_RS16640 pilN 3514401..3515042 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  LO007_RS16645 pilM 3515042..3516100 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO007_RS16650 ponA 3516262..3518817 (+) 2556 WP_031999621.1 penicillin-binding protein PBP1a -
  LO007_RS16655 - 3518835..3519659 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  LO007_RS16660 - 3519662..3519994 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=628619 LO007_RS16640 WP_000201226.1 3514401..3515042(-) (pilN) [Acinetobacter baumannii strain OC059]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=628619 LO007_RS16640 WP_000201226.1 3514401..3515042(-) (pilN) [Acinetobacter baumannii strain OC059]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709