Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LO007_RS16630 Genome accession   NZ_CP087312
Coordinates   3513126..3513653 (-) Length   175 a.a.
NCBI ID   WP_057049054.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3508126..3518653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS16610 - 3508315..3509190 (-) 876 WP_000218806.1 hypothetical protein -
  LO007_RS16615 aroB 3509206..3510288 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO007_RS16620 aroK 3510317..3510886 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO007_RS16625 pilQ 3510898..3513063 (-) 2166 WP_188137325.1 type IV pilus secretin PilQ family protein Machinery gene
  LO007_RS16630 pilP 3513126..3513653 (-) 528 WP_057049054.1 pilus assembly protein PilP Machinery gene
  LO007_RS16635 pilO 3513664..3514404 (-) 741 WP_031999622.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO007_RS16640 pilN 3514401..3515042 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  LO007_RS16645 pilM 3515042..3516100 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19449.66 Da        Isoelectric Point: 8.9898

>NTDB_id=628617 LO007_RS16630 WP_057049054.1 3513126..3513653(-) (pilP) [Acinetobacter baumannii strain OC059]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMTNIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628617 LO007_RS16630 WP_057049054.1 3513126..3513653(-) (pilP) [Acinetobacter baumannii strain OC059]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGACCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709