Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LO007_RS16495 Genome accession   NZ_CP087312
Coordinates   3481138..3481620 (-) Length   160 a.a.
NCBI ID   WP_001046424.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3476138..3486620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS16460 - 3476247..3477278 (+) 1032 WP_002007674.1 lipase secretion chaperone -
  LO007_RS16465 - 3477393..3478334 (+) 942 WP_085916958.1 triacylglycerol lipase -
  LO007_RS16470 rplS 3478387..3478755 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO007_RS16475 trmD 3478964..3479704 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO007_RS16480 rimM 3479750..3480298 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO007_RS16485 rpsP 3480318..3480569 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO007_RS16490 pilE 3480716..3481141 (-) 426 WP_031999633.1 type IV pilin protein Machinery gene
  LO007_RS16495 pilY2 3481138..3481620 (-) 483 WP_001046424.1 type IV pilin protein Machinery gene
  LO007_RS16500 pilY1 3481633..3485487 (-) 3855 WP_000768946.1 PilC/PilY family type IV pilus protein Machinery gene
  LO007_RS16505 pilX 3485499..3486317 (-) 819 WP_188137324.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17577.81 Da        Isoelectric Point: 8.4834

>NTDB_id=628609 LO007_RS16495 WP_001046424.1 3481138..3481620(-) (pilY2) [Acinetobacter baumannii strain OC059]
MNKYSILRFNQGVTLIELMVVIVIVAIFTSIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=628609 LO007_RS16495 WP_001046424.1 3481138..3481620(-) (pilY2) [Acinetobacter baumannii strain OC059]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTACTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419