Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LO005_RS01465 Genome accession   NZ_CP087309
Coordinates   308159..308899 (+) Length   246 a.a.
NCBI ID   WP_086379706.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303159..313899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS01450 ponA 303746..306301 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LO005_RS01455 pilM 306463..307521 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO005_RS01460 pilN 307521..308162 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  LO005_RS01465 pilO 308159..308899 (+) 741 WP_086379706.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO005_RS01470 pilP 308910..309437 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO005_RS01475 pilQ 309505..311670 (+) 2166 WP_029424115.1 type IV pilus secretin PilQ family protein Machinery gene
  LO005_RS01480 aroK 311682..312251 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LO005_RS01485 aroB 312280..313362 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27818.64 Da        Isoelectric Point: 5.1365

>NTDB_id=628529 LO005_RS01465 WP_086379706.1 308159..308899(+) (pilO) [Acinetobacter baumannii strain OC068]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQK
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=628529 LO005_RS01465 WP_086379706.1 308159..308899(+) (pilO) [Acinetobacter baumannii strain OC068]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGAAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679