Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LO005_RS01460 Genome accession   NZ_CP087309
Coordinates   307521..308162 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain OC068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302521..313162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS01440 - 302569..302901 (+) 333 WP_000169602.1 hypothetical protein -
  LO005_RS01445 - 302904..303728 (+) 825 WP_086221410.1 putative RNA methyltransferase -
  LO005_RS01450 ponA 303746..306301 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LO005_RS01455 pilM 306463..307521 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO005_RS01460 pilN 307521..308162 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  LO005_RS01465 pilO 308159..308899 (+) 741 WP_086379706.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO005_RS01470 pilP 308910..309437 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO005_RS01475 pilQ 309505..311670 (+) 2166 WP_029424115.1 type IV pilus secretin PilQ family protein Machinery gene
  LO005_RS01480 aroK 311682..312251 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=628528 LO005_RS01460 WP_000201227.1 307521..308162(+) (pilN) [Acinetobacter baumannii strain OC068]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=628528 LO005_RS01460 WP_000201227.1 307521..308162(+) (pilN) [Acinetobacter baumannii strain OC068]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709