Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LO005_RS01470 Genome accession   NZ_CP087309
Coordinates   308910..309437 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain OC068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303910..314437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS01455 pilM 306463..307521 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO005_RS01460 pilN 307521..308162 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  LO005_RS01465 pilO 308159..308899 (+) 741 WP_086379706.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO005_RS01470 pilP 308910..309437 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO005_RS01475 pilQ 309505..311670 (+) 2166 WP_029424115.1 type IV pilus secretin PilQ family protein Machinery gene
  LO005_RS01480 aroK 311682..312251 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LO005_RS01485 aroB 312280..313362 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO005_RS01490 - 313378..314253 (+) 876 WP_029424116.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=628530 LO005_RS01470 WP_000695065.1 308910..309437(+) (pilP) [Acinetobacter baumannii strain OC068]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628530 LO005_RS01470 WP_000695065.1 308910..309437(+) (pilP) [Acinetobacter baumannii strain OC068]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714