Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LOZ96_RS16260 Genome accession   NZ_CP087304
Coordinates   3338131..3338541 (-) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain OC081     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3333131..3343541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ96_RS16230 - 3333217..3333486 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LOZ96_RS16235 rapZ 3333483..3334334 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LOZ96_RS16240 panC 3334357..3335205 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LOZ96_RS16245 panB 3335209..3336018 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LOZ96_RS16250 folK 3336064..3336546 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LOZ96_RS16255 pcnB 3336543..3338006 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LOZ96_RS16260 comEA 3338131..3338541 (-) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  LOZ96_RS16265 mazG 3338510..3339316 (-) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  LOZ96_RS16270 - 3339428..3340201 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  LOZ96_RS16275 - 3340246..3342552 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=628509 LOZ96_RS16260 WP_001200131.1 3338131..3338541(-) (comEA) [Acinetobacter baumannii strain OC081]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628509 LOZ96_RS16260 WP_001200131.1 3338131..3338541(-) (comEA) [Acinetobacter baumannii strain OC081]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404