Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LO014_RS16875 Genome accession   NZ_CP087300
Coordinates   3367770..3368588 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain OC061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362770..3373588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS16860 pilE 3362987..3363412 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  LO014_RS16865 pilY2 3363409..3363891 (-) 483 WP_001046418.1 type IV pilin protein Machinery gene
  LO014_RS16870 pilY1 3363904..3367758 (-) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene
  LO014_RS16875 pilX 3367770..3368588 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO014_RS16880 pilW 3368585..3369586 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO014_RS16885 pilV 3369587..3370147 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LO014_RS16890 fimU 3370141..3370614 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO014_RS16895 ispH 3370784..3371734 (-) 951 WP_258583672.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO014_RS16900 gmk 3371857..3372486 (+) 630 WP_000015937.1 guanylate kinase -
  LO014_RS16905 rpoZ 3372559..3372837 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO014_RS16910 - 3372876..3373006 (+) 131 Protein_3298 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=628468 LO014_RS16875 WP_000149374.1 3367770..3368588(-) (pilX) [Acinetobacter baumannii strain OC061]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=628468 LO014_RS16875 WP_000149374.1 3367770..3368588(-) (pilX) [Acinetobacter baumannii strain OC061]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCCGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993