Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LO739_RS01225 Genome accession   NZ_CP087280
Coordinates   268468..268998 (+) Length   176 a.a.
NCBI ID   WP_032615999.1    Uniprot ID   A0A3E1ZQY9
Organism   Leclercia adecarboxylata strain SH19PE29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 263468..273998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO739_RS01205 (LO739_01205) aphA 263794..264507 (+) 714 WP_032615991.1 acid phosphatase AphA -
  LO739_RS01210 (LO739_01210) - 264619..265035 (+) 417 WP_230431114.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LO739_RS01215 (LO739_01215) - 265038..265391 (+) 354 WP_032615995.1 MmcQ/YjbR family DNA-binding protein -
  LO739_RS01220 (LO739_01220) uvrA 265392..268217 (-) 2826 WP_230431115.1 excinuclease ABC subunit UvrA -
  LO739_RS01225 (LO739_01225) ssb 268468..268998 (+) 531 WP_032615999.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LO739_RS01230 (LO739_01230) - 269096..269377 (-) 282 WP_032616001.1 YjcB family protein -
  LO739_RS01235 (LO739_01235) - 269988..271316 (+) 1329 WP_230431116.1 GGDEF domain-containing protein -
  LO739_RS01240 (LO739_01240) - 271655..273241 (+) 1587 Protein_235 EAL domain-containing protein -
  LO739_RS01245 (LO739_01245) soxS 273238..273564 (-) 327 WP_039031951.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18849.87 Da        Isoelectric Point: 5.2456

>NTDB_id=628302 LO739_RS01225 WP_032615999.1 268468..268998(+) (ssb) [Leclercia adecarboxylata strain SH19PE29]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=628302 LO739_RS01225 WP_032615999.1 268468..268998(+) (ssb) [Leclercia adecarboxylata strain SH19PE29]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACTGAAGTGGTGGTAAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGCCGTCTGCACCA
GCGCAGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1ZQY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.602
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472