Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KXU59_RS02620 Genome accession   NZ_CP087266
Coordinates   528627..529214 (-) Length   195 a.a.
NCBI ID   WP_244776615.1    Uniprot ID   -
Organism   Aeromonas veronii strain HD6448     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 523627..534214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXU59_RS02595 (LOS88_02595) cspA 523713..523925 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  KXU59_RS02600 (LOS88_02600) - 524299..525396 (+) 1098 WP_244777025.1 ISAs1 family transposase -
  KXU59_RS02605 (LOS88_02605) yjbD 525742..526026 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  KXU59_RS02610 (LOS88_02610) - 526173..527075 (-) 903 WP_244776614.1 cation diffusion facilitator family transporter -
  KXU59_RS24695 - 527539..527661 (+) 123 WP_005306071.1 hypothetical protein -
  KXU59_RS02615 (LOS88_02615) - 527734..528477 (-) 744 WP_026034915.1 transporter substrate-binding domain-containing protein -
  KXU59_RS02620 (LOS88_02620) ssb 528627..529214 (-) 588 WP_244776615.1 single-stranded DNA-binding protein Machinery gene
  KXU59_RS02625 (LOS88_02625) - 529641..530288 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  KXU59_RS02630 (LOS88_02630) - 530288..530731 (+) 444 WP_244776616.1 curli production assembly/transport protein CsgE -
  KXU59_RS02635 (LOS88_02635) - 530743..531144 (+) 402 WP_019445195.1 curli assembly protein CsgF -
  KXU59_RS02640 (LOS88_02640) - 531152..531991 (+) 840 WP_244776617.1 CsgG/HfaB family protein -
  KXU59_RS02645 (LOS88_02645) - 532178..532699 (+) 522 WP_244776618.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21613.14 Da        Isoelectric Point: 5.9301

>NTDB_id=628255 KXU59_RS02620 WP_244776615.1 528627..529214(-) (ssb) [Aeromonas veronii strain HD6448]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPTPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=628255 KXU59_RS02620 WP_244776615.1 528627..529214(-) (ssb) [Aeromonas veronii strain HD6448]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGACACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456