Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LM502_RS01395 Genome accession   NZ_CP087224
Coordinates   302535..303152 (+) Length   205 a.a.
NCBI ID   WP_013331020.1    Uniprot ID   E1V5N6
Organism   Halomonas elongata strain DL7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 297535..308152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM502_RS01385 (LM502_01385) uvrA 298028..300889 (-) 2862 WP_013331018.1 excinuclease ABC subunit UvrA -
  LM502_RS01390 (LM502_01390) - 301047..302441 (+) 1395 WP_013331019.1 MFS transporter -
  LM502_RS01395 (LM502_01395) ssb 302535..303152 (+) 618 WP_013331020.1 single-stranded DNA-binding protein Machinery gene
  LM502_RS01400 (LM502_01400) - 303237..304403 (-) 1167 WP_013331021.1 arylamine N-acetyltransferase family protein -
  LM502_RS01405 (LM502_01405) - 304647..305540 (+) 894 WP_041601836.1 sugar nucleotide-binding protein -
  LM502_RS01410 (LM502_01410) - 305537..306301 (+) 765 WP_013331023.1 lysophospholipid acyltransferase family protein -
  LM502_RS01415 (LM502_01415) fabB 306384..307598 (-) 1215 WP_013331024.1 beta-ketoacyl-ACP synthase I -
  LM502_RS01420 (LM502_01420) fabA 307612..308127 (-) 516 WP_013331025.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22287.25 Da        Isoelectric Point: 4.9464

>NTDB_id=628142 LM502_RS01395 WP_013331020.1 302535..303152(+) (ssb) [Halomonas elongata strain DL7]
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWTDRQSGQRQERTEWHRVVMFNKLAEISQQYLRKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGEMGGAPQGGFGGGQPQQQQQGGFGGQPQQQPQGGFGGQPQQPPQQQ
GGNYGGGQPQRPPQQPAPNQGGQQGGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 618 bp        

>NTDB_id=628142 LM502_RS01395 WP_013331020.1 302535..303152(+) (ssb) [Halomonas elongata strain DL7]
ATGGCCCGTGGCGTCAACAAGGTCATACTCATCGGCAACCTCGGGCAGGACCCGGAAGTGCGCTTCACGCCCTCCGGTAC
CGCGGTGGCCAACCTCAACCTGGCAACCACCGATACCTGGACCGACCGTCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGGGTGGTGATGTTCAACAAGCTGGCCGAGATTTCCCAGCAGTACCTGCGCAAGGGCTCCAAGGTGTATATCGAG
GGGCGCCTGCAGACTCGCAAGTGGCAGGACCAGAACGGTCAGGACCGATACAGCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGACTCGCGCGGCGGCGAGATGGGCGGCGCCCCGCAGGGTGGCTTCGGTGGCGGCCAGCCGCAGCAGCAACAGC
AGGGCGGCTTTGGTGGCCAGCCCCAGCAGCAGCCGCAAGGTGGTTTCGGCGGCCAGCCGCAGCAACCGCCGCAGCAGCAA
GGTGGCAACTACGGCGGTGGTCAGCCGCAGCGTCCGCCGCAGCAGCCGGCCCCCAACCAGGGTGGCCAGCAGGGCGGCAA
CTATGGTGCCCCCGACCCGGGCAGCTTCGACGACTTCGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E1V5N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.923

100

0.527
  ssb Glaesserella parasuis strain SC1401

49.02

99.512

0.488
  ssb Neisseria meningitidis MC58

44.335

99.024

0.439
  ssb Neisseria gonorrhoeae MS11

44.059

98.537

0.434