Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY68_RS28545 Genome accession   NZ_CP087205
Coordinates   6363027..6363554 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. B21-053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6358027..6368554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY68_RS28525 (LOY68_28500) - 6358252..6358680 (+) 429 WP_265041199.1 DUF350 domain-containing protein -
  LOY68_RS28530 (LOY68_28505) - 6358702..6359430 (+) 729 WP_265041201.1 DUF1190 domain-containing protein -
  LOY68_RS28535 (LOY68_28510) - 6359442..6360599 (+) 1158 WP_265041202.1 glutathionylspermidine synthase family protein -
  LOY68_RS28540 (LOY68_28515) - 6360747..6362951 (+) 2205 WP_265041204.1 OsmC domain/YcaO domain-containing protein -
  LOY68_RS28545 (LOY68_28520) ssb 6363027..6363554 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  LOY68_RS28550 (LOY68_28525) - 6363564..6364961 (-) 1398 WP_054052253.1 MFS transporter -
  LOY68_RS28555 (LOY68_28530) uvrA 6365153..6367987 (+) 2835 WP_054616802.1 excinuclease ABC subunit UvrA -
  LOY68_RS28560 (LOY68_28535) bfr 6368063..6368527 (-) 465 WP_007933692.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=628132 LOY68_RS28545 WP_010467282.1 6363027..6363554(-) (ssb) [Pseudomonas sp. B21-053]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628132 LOY68_RS28545 WP_010467282.1 6363027..6363554(-) (ssb) [Pseudomonas sp. B21-053]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCAGCCC
CACGCCAACAGGCTCCGCGTCCGCAGCAGTCGGCTCCACAACAGTCGCGTCAGGCTCCGCCTCCACAGCAGGCAGCGCCG
CAACCGGCTCCGGATTTCGACAGCTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491