Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY67_RS24775 Genome accession   NZ_CP087203
Coordinates   5686403..5686918 (-) Length   171 a.a.
NCBI ID   WP_024778338.1    Uniprot ID   A0A0B1YWX5
Organism   Pseudomonas sp. B21-056     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5681403..5691918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY67_RS24750 (LOY67_24725) - 5681694..5682452 (-) 759 WP_265064853.1 alpha/beta hydrolase family protein -
  LOY67_RS24755 (LOY67_24730) - 5682442..5683551 (-) 1110 WP_265064854.1 DUF3182 family protein -
  LOY67_RS24760 (LOY67_24735) - 5683882..5684874 (-) 993 WP_265064855.1 GlxA family transcriptional regulator -
  LOY67_RS24765 (LOY67_24740) - 5684972..5685526 (+) 555 WP_265064856.1 cysteine hydrolase family protein -
  LOY67_RS24770 (LOY67_24745) - 5685663..5686286 (+) 624 WP_265064857.1 hypothetical protein -
  LOY67_RS24775 (LOY67_24750) ssb 5686403..5686918 (-) 516 WP_024778338.1 single-stranded DNA-binding protein Machinery gene
  LOY67_RS24780 (LOY67_24755) - 5686928..5688325 (-) 1398 WP_265064858.1 MFS transporter -
  LOY67_RS24785 (LOY67_24760) uvrA 5688505..5691339 (+) 2835 WP_265064859.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19113.27 Da        Isoelectric Point: 5.9455

>NTDB_id=628073 LOY67_RS24775 WP_024778338.1 5686403..5686918(-) (ssb) [Pseudomonas sp. B21-056]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPRQQAPRPQSAPQPQRERPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=628073 LOY67_RS24775 WP_024778338.1 5686403..5686918(-) (ssb) [Pseudomonas sp. B21-056]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAGGTTCGCTACCTGCCTAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCTGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGTTGCAGACGCGTGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGTGGCCGTCCACAGGGTGACCAGCAGCAGGGTGGCAACAACTACCAGCAGTCGGCCCCGCGTCAGC
AGGCGCCTCGTCCGCAGTCGGCGCCACAGCCACAACGCGAGCGCCCGGCCCCACAACAGGCCGCGCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YWX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.593

100

0.602
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.515
  ssb Neisseria meningitidis MC58

47.486

100

0.497
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.491