Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY69_RS26895 Genome accession   NZ_CP087201
Coordinates   6052781..6053290 (-) Length   169 a.a.
NCBI ID   WP_011063767.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-059     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6047781..6058290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY69_RS26880 (LOY69_26825) - 6048501..6049787 (+) 1287 WP_110596279.1 hypothetical protein -
  LOY69_RS26885 (LOY69_26830) - 6049791..6051617 (+) 1827 WP_102882398.1 hypothetical protein -
  LOY69_RS26890 (LOY69_26835) - 6051632..6052684 (+) 1053 WP_265073841.1 hypothetical protein -
  LOY69_RS26895 (LOY69_26840) ssb 6052781..6053290 (-) 510 WP_011063767.1 single-stranded DNA-binding protein Machinery gene
  LOY69_RS26900 (LOY69_26845) - 6053300..6054694 (-) 1395 WP_265073842.1 MFS transporter -
  LOY69_RS26905 (LOY69_26850) uvrA 6054872..6057706 (+) 2835 WP_102882401.1 excinuclease ABC subunit UvrA -
  LOY69_RS26910 (LOY69_26855) bfr 6057824..6058288 (-) 465 WP_025129396.1 bacterioferritin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18784.96 Da        Isoelectric Point: 5.9455

>NTDB_id=628015 LOY69_RS26895 WP_011063767.1 6052781..6053290(-) (ssb) [Pseudomonas sp. B21-059]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPAPQPQRESRPAPQQAAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=628015 LOY69_RS26895 WP_011063767.1 6052781..6053290(-) (ssb) [Pseudomonas sp. B21-059]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTATCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGCGCACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAGATTGCCGGTGAGTACCTGCGCAAGGGTTCCCAGGTCTACATCGAG
GGCAAACTGCAGACTCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATTGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAGGGCGACCAGCAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCTCAGC
AGTCCCGTCCTGCTCCGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCGCAGCCGGCACCGGATTTC
GACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.159

100

0.491