Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY37_RS24415 Genome accession   NZ_CP087197
Coordinates   5320412..5320924 (-) Length   170 a.a.
NCBI ID   WP_045200019.1    Uniprot ID   A0A1H1A2L1
Organism   Pseudomonas sp. B21-012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5311434..5320205 5320412..5320924 flank 207


Gene organization within MGE regions


Location: 5311434..5320924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY37_RS24365 (LOY37_24340) - 5311434..5312420 (+) 987 WP_258715908.1 restriction endonuclease -
  LOY37_RS24370 (LOY37_24345) - 5312509..5313999 (+) 1491 WP_258715909.1 Shedu immune nuclease family protein -
  LOY37_RS24375 (LOY37_24350) - 5314042..5314247 (-) 206 Protein_4818 hypothetical protein -
  LOY37_RS24380 (LOY37_24355) - 5314399..5315349 (-) 951 WP_258715910.1 hypothetical protein -
  LOY37_RS24385 (LOY37_24360) - 5315404..5316576 (-) 1173 WP_258715911.1 DUF3800 domain-containing protein -
  LOY37_RS24390 (LOY37_24365) - 5316638..5317006 (-) 369 WP_258715912.1 hypothetical protein -
  LOY37_RS24395 (LOY37_24370) - 5317115..5317357 (+) 243 Protein_4822 phosphoglycerate mutase family protein -
  LOY37_RS24400 (LOY37_24375) - 5317423..5318585 (+) 1163 WP_258715913.1 IS3 family transposase -
  LOY37_RS24405 (LOY37_24380) - 5319013..5319786 (-) 774 WP_258715914.1 site-specific integrase -
  LOY37_RS24410 (LOY37_24385) - 5319969..5320160 (-) 192 WP_258715915.1 hypothetical protein -
  LOY37_RS24415 (LOY37_24390) ssb 5320412..5320924 (-) 513 WP_045200019.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18940.06 Da        Isoelectric Point: 5.9314

>NTDB_id=627911 LOY37_RS24415 WP_045200019.1 5320412..5320924(-) (ssb) [Pseudomonas sp. B21-012]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQNQDGAPQGGNNYNQAPRQQAPRPQQSAPQQRPAPQQAAPQPAPD
FDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=627911 LOY37_RS24415 WP_045200019.1 5320412..5320924(-) (ssb) [Pseudomonas sp. B21-012]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGCACCGAAT
GGCACCGCGTATCGATGTTCGGCAAAGTTGCCGAAATCGCCGGTGAATACCTGCGCAAAGGCTCGCAAGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTCGGTGGCCGCCCGCAGAATCAGGACGGCGCCCCGCAAGGCGGCAACAATTACAACCAGGCGCCACGCC
AACAGGCTCCGCGTCCACAGCAGTCCGCGCCGCAACAGCGCCCGGCGCCTCAGCAGGCCGCACCGCAGCCGGCTCCGGAC
TTCGACAGCTTCGATGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1A2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.624
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.529
  ssb Neisseria meningitidis MC58

50.282

100

0.524
  ssb Neisseria gonorrhoeae MS11

50.282

100

0.524