Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY36_RS25430 Genome accession   NZ_CP087193
Coordinates   5661623..5662144 (-) Length   173 a.a.
NCBI ID   WP_007933689.1    Uniprot ID   A0A291ABB2
Organism   Pseudomonas sp. B21-019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5656623..5667144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS25410 (LOY36_25370) - 5656880..5657308 (+) 429 WP_019650835.1 DUF350 domain-containing protein -
  LOY36_RS25415 (LOY36_25375) - 5657328..5658056 (+) 729 WP_019650834.1 DUF1190 domain-containing protein -
  LOY36_RS25420 (LOY36_25380) - 5658069..5659226 (+) 1158 WP_258671294.1 glutathionylspermidine synthase family protein -
  LOY36_RS25425 (LOY36_25385) - 5659347..5661551 (+) 2205 WP_258671295.1 OsmC domain/YcaO domain-containing protein -
  LOY36_RS25430 (LOY36_25390) ssb 5661623..5662144 (-) 522 WP_007933689.1 single-stranded DNA-binding protein Machinery gene
  LOY36_RS25435 (LOY36_25395) - 5662154..5663551 (-) 1398 WP_019650831.1 MFS transporter -
  LOY36_RS25440 (LOY36_25400) uvrA 5663743..5666577 (+) 2835 WP_258671296.1 excinuclease ABC subunit UvrA -
  LOY36_RS25445 (LOY36_25405) bfr 5666652..5667116 (-) 465 WP_007933692.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19140.30 Da        Isoelectric Point: 5.9314

>NTDB_id=627799 LOY36_RS25430 WP_007933689.1 5661623..5662144(-) (ssb) [Pseudomonas sp. B21-019]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRPAPPQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=627799 LOY36_RS25430 WP_007933689.1 5661623..5662144(-) (ssb) [Pseudomonas sp. B21-019]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAAGTAGCCGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAATCCGCTCCAGCTC
CACGCCAGCAGGCTCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCGCGCCCGGCTCCACCGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291ABB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.459

100

0.601
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.514
  ssb Neisseria meningitidis MC58

47.778

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.497