Detailed information NTG0627770

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: LOY31_RS25980
• Genome accession: NZ_CP087192
• Coordinates: 5771133..5771651 (-)
• Length: 172 a.a.
• NCBI ID: WP_007966163.1
• Uniprot ID: A0A031FLF5
• Organism: Pseudomonas sp. B21-021
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	5757586..5777423	5771133..5771651	within	0

Gene organization within MGE regions

Location: 5757586..5777423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY31_RS25925 (LOY31_25905)	-	5759038..5759682 (+)	645	WP_258712412.1	hypothetical protein	-
LOY31_RS25930 (LOY31_25910)	-	5759675..5760541 (+)	867	WP_258712413.1	ImmA/IrrE family metallo-endopeptidase	-
LOY31_RS25935 (LOY31_25915)	-	5760534..5761604 (+)	1071	WP_258712414.1	beta family protein	-
LOY31_RS25940 (LOY31_25920)	-	5761563..5762150 (-)	588	WP_258712415.1	sce7726 family protein	-
LOY31_RS25945 (LOY31_25925)	-	5762568..5763467 (-)	900	WP_258712416.1	hypothetical protein	-
LOY31_RS25950 (LOY31_25930)	-	5763685..5765094 (+)	1410	WP_258712417.1	hypothetical protein	-
LOY31_RS25955 (LOY31_25935)	-	5765390..5765725 (-)	336	WP_258712418.1	DUF6527 family protein	-
LOY31_RS25960 (LOY31_25940)	-	5765725..5767095 (-)	1371	WP_258712419.1	ThiF family adenylyltransferase	-
LOY31_RS25965 (LOY31_25945)	-	5767116..5768201 (-)	1086	WP_258712420.1	multiubiquitin domain-containing protein	-
LOY31_RS25970 (LOY31_25950)	-	5768706..5769026 (+)	321	WP_160042032.1	helix-turn-helix domain-containing protein	-
LOY31_RS25975 (LOY31_25955)	-	5769029..5769913 (+)	885	WP_258712421.1	ImmA/IrrE family metallo-endopeptidase	-
LOY31_RS25980 (LOY31_25960)	ssb	5771133..5771651 (-)	519	WP_007966163.1	single-stranded DNA-binding protein	Machinery gene
LOY31_RS25985 (LOY31_25965)	-	5771661..5773058 (-)	1398	WP_007955631.1	MFS transporter	-
LOY31_RS25990 (LOY31_25970)	uvrA	5773250..5776084 (+)	2835	WP_258712422.1	excinuclease ABC subunit UvrA	-
LOY31_RS25995 (LOY31_25975)	-	5776198..5777423 (+)	1226	WP_408980453.1	IS3 family transposase	-

Sequence

Protein

• Length: 172 a.a.
• Molecular weight: 19125.28 Da
• Isoelectric Point: 5.9314

>NTDB_id=627770 LOY31_RS25980 WP_007966163.1 5771133..5771651(-) (ssb) [Pseudomonas sp. B21-021]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide

• Length: 519 bp

>NTDB_id=627770 LOY31_RS25980 WP_007966163.1 5771133..5771651(-) (ssb) [Pseudomonas sp. B21-021]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGCCAGGATCCCGAAGTACGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGATAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTATCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTATCAGCAGCAGGCGCCACGCC
AACAGGCTCCGCGTCCGCAGCAGTCGGCACCTCAGCAGCGTCCGGCCCCGGCTCCACAGCAGGCCGCACCGCAACCGGCT
CCGGATTTTGACAGCTTCGATGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (5-107)

3D structure

• AlphaFold DB: A0A031FLF5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	57.923	100	0.616
ssb	Glaesserella parasuis strain SC1401	49.451	100	0.523
ssb	Neisseria meningitidis MC58	47.514	100	0.5
ssb	Neisseria gonorrhoeae MS11	47.514	100	0.5