Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY24_RS02515 Genome accession   NZ_CP087183
Coordinates   569423..569974 (+) Length   183 a.a.
NCBI ID   WP_016497749.1    Uniprot ID   A0A0Q4N073
Organism   Pseudomonas putida strain B21-029     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 564423..574974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY24_RS02500 (LOY24_02500) bfr 564518..564982 (+) 465 WP_003257116.1 bacterioferritin -
  LOY24_RS02505 (LOY24_02505) uvrA 565055..567889 (-) 2835 WP_258654903.1 excinuclease ABC subunit UvrA -
  LOY24_RS02510 (LOY24_02510) - 568019..569413 (+) 1395 WP_258654904.1 MFS transporter -
  LOY24_RS02515 (LOY24_02515) ssb 569423..569974 (+) 552 WP_016497749.1 single-stranded DNA-binding protein Machinery gene
  LOY24_RS02520 (LOY24_02520) - 570045..570533 (-) 489 WP_258654907.1 heme-binding protein -
  LOY24_RS02525 (LOY24_02525) fdnG 570855..573923 (+) 3069 WP_258654908.1 formate dehydrogenase-N subunit alpha -
  LOY24_RS02530 (LOY24_02530) fdxH 573923..574873 (+) 951 WP_258654910.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20301.40 Da        Isoelectric Point: 5.9286

>NTDB_id=627518 LOY24_RS02515 WP_016497749.1 569423..569974(+) (ssb) [Pseudomonas putida strain B21-029]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=627518 LOY24_RS02515 WP_016497749.1 569423..569974(+) (ssb) [Pseudomonas putida strain B21-029]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGTGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCGGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCTCAGGGCCAGCAGCAAGGCGGCGACCCGTACAATCAGGGTGGCGGTAATTACAACC
AGGGTGGCGGCCAGCAGCAACAGTACAACCAGGCTCCGCCTCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGC
CCAGCGCCCCAGCAGCCTGCGCCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q4N073

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.216

100

0.568
  ssb Glaesserella parasuis strain SC1401

48.969

100

0.519
  ssb Neisseria meningitidis MC58

48.108

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.486