Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY54_RS24500 Genome accession   NZ_CP087180
Coordinates   5302540..5303052 (-) Length   170 a.a.
NCBI ID   WP_258608268.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5297540..5308052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY54_RS24485 (LOY54_24460) - 5297667..5298320 (-) 654 WP_045200010.1 formate dehydrogenase subunit gamma -
  LOY54_RS24490 (LOY54_24465) fdxH 5298317..5299267 (-) 951 WP_045200013.1 formate dehydrogenase subunit beta -
  LOY54_RS24495 (LOY54_24470) fdnG 5299267..5302332 (-) 3066 WP_258608267.1 formate dehydrogenase-N subunit alpha -
  LOY54_RS24500 (LOY54_24475) ssb 5302540..5303052 (-) 513 WP_258608268.1 single-stranded DNA-binding protein Machinery gene
  LOY54_RS24505 (LOY54_24480) - 5303062..5304456 (-) 1395 WP_258608270.1 MFS transporter -
  LOY54_RS24510 (LOY54_24485) uvrA 5304586..5307420 (+) 2835 WP_045200024.1 excinuclease ABC subunit UvrA -
  LOY54_RS24515 (LOY54_24490) bfr 5307481..5307945 (-) 465 WP_045200027.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18924.06 Da        Isoelectric Point: 5.9314

>NTDB_id=627464 LOY54_RS24500 WP_258608268.1 5302540..5303052(-) (ssb) [Pseudomonas sp. B21-032]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQNQDGAPQGGNNFNQAPRQQAPRPQQSAPQQRPAPQQAAPQPAPD
FDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=627464 LOY54_RS24500 WP_258608268.1 5302540..5303052(-) (ssb) [Pseudomonas sp. B21-032]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGCACCGAAT
GGCACCGCGTATCGATGTTCGGCAAAGTTGCCGAAATCGCCGGTGAATACCTGCGCAAAGGCTCGCAAGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAAATCGTTGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGCCCGCAGAACCAGGACGGCGCCCCGCAAGGCGGCAACAATTTCAACCAGGCGCCACGCC
AACAGGCTCCGCGTCCACAGCAGTCCGCGCCGCAACAGCGCCCGGCGCCTCAGCAGGCCGCACCGCAGCCGGCTCCGGAC
TTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.624
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.529
  ssb Neisseria meningitidis MC58

50

100

0.518
  ssb Neisseria gonorrhoeae MS11

49.432

100

0.512