Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY55_RS27345 Genome accession   NZ_CP087176
Coordinates   5971409..5971930 (-) Length   173 a.a.
NCBI ID   WP_046028847.1    Uniprot ID   A0A2V2A2Z9
Organism   Pseudomonas sp. B21-040     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5966409..5976930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY55_RS27325 (LOY55_27285) - 5966634..5967062 (+) 429 WP_027924370.1 DUF350 domain-containing protein -
  LOY55_RS27330 (LOY55_27290) - 5967082..5967801 (+) 720 WP_046028842.1 DUF1190 domain-containing protein -
  LOY55_RS27335 (LOY55_27295) - 5967814..5968971 (+) 1158 WP_223525631.1 glutathionylspermidine synthase family protein -
  LOY55_RS27340 (LOY55_27300) - 5969130..5971334 (+) 2205 WP_223525632.1 OsmC domain/YcaO domain-containing protein -
  LOY55_RS27345 (LOY55_27305) ssb 5971409..5971930 (-) 522 WP_046028847.1 single-stranded DNA-binding protein Machinery gene
  LOY55_RS27350 (LOY55_27310) - 5971940..5973337 (-) 1398 WP_109787308.1 MFS transporter -
  LOY55_RS27355 (LOY55_27315) uvrA 5973530..5976364 (+) 2835 WP_109787307.1 excinuclease ABC subunit UvrA -
  LOY55_RS27360 (LOY55_27320) bfr 5976429..5976893 (-) 465 WP_223525633.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19171.31 Da        Isoelectric Point: 5.9314

>NTDB_id=627365 LOY55_RS27345 WP_046028847.1 5971409..5971930(-) (ssb) [Pseudomonas sp. B21-040]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=627365 LOY55_RS27345 WP_046028847.1 5971409..5971930(-) (ssb) [Pseudomonas sp. B21-040]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCTGAAGTTCGTTACCTGCCAAATGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTATACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGTGGTGGCAACAACTACCAGCAATCCGCTCCGGCCC
CACGCCAACAGGCACCACGTCCGCAGCAGTCGGCGCCACAACAGTCGCGTCCGGCTCCACAGCAAGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V2A2Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.692

100

0.607
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.514
  ssb Neisseria meningitidis MC58

46.667

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.486