Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY43_RS25380 Genome accession   NZ_CP087175
Coordinates   5696782..5697306 (-) Length   174 a.a.
NCBI ID   WP_008081898.1    Uniprot ID   J3IML3
Organism   Pseudomonas sp. B21-041     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5691782..5702306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY43_RS25350 (LOY43_25315) - 5692025..5692693 (+) 669 WP_095048832.1 YjfI family protein -
  LOY43_RS25355 (LOY43_25320) - 5692711..5693409 (+) 699 WP_016983574.1 PspA/IM30 family protein -
  LOY43_RS25360 (LOY43_25325) - 5693621..5694271 (+) 651 WP_095048833.1 DUF2491 family protein -
  LOY43_RS25365 (LOY43_25330) - 5694287..5694712 (+) 426 WP_038362100.1 DUF350 domain-containing protein -
  LOY43_RS25370 (LOY43_25335) - 5694730..5695422 (+) 693 WP_258708889.1 DUF1190 domain-containing protein -
  LOY43_RS25375 (LOY43_25340) - 5695425..5696582 (+) 1158 WP_258708890.1 glutathionylspermidine synthase family protein -
  LOY43_RS25380 (LOY43_25345) ssb 5696782..5697306 (-) 525 WP_008081898.1 single-stranded DNA-binding protein Machinery gene
  LOY43_RS25385 (LOY43_25350) - 5697316..5698713 (-) 1398 WP_007950096.1 MFS transporter -
  LOY43_RS25390 (LOY43_25355) uvrA 5698904..5701738 (+) 2835 WP_095048836.1 excinuclease ABC subunit UvrA -
  LOY43_RS25395 (LOY43_25360) bfr 5701805..5702272 (-) 468 WP_007918444.1 bacterioferritin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19242.39 Da        Isoelectric Point: 5.9314

>NTDB_id=627337 LOY43_RS25380 WP_008081898.1 5696782..5697306(-) (ssb) [Pseudomonas sp. B21-041]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=627337 LOY43_RS25380 WP_008081898.1 5696782..5697306(-) (ssb) [Pseudomonas sp. B21-041]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGTCGGCTCCGGCTC
CTCGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCCCCGGCTCCACAGCAGGCCGCACCGCAA
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3IML3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.603
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.489