Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XFF4834R_RS08445 Genome accession   NC_022541
Coordinates   1983421..1983957 (+) Length   178 a.a.
NCBI ID   WP_022558881.1    Uniprot ID   A0AB34Q6Q5
Organism   Xanthomonas citri pv. fuscans     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1978421..1988957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFF4834R_RS08430 (XFF4834R_chr17310) murD 1979405..1980811 (+) 1407 WP_022558878.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  XFF4834R_RS08435 (XFF4834R_chr17320) - 1981149..1981949 (+) 801 WP_022558879.1 dienelactone hydrolase family protein -
  XFF4834R_RS08440 (XFF4834R_chr17330) - 1982148..1983146 (-) 999 WP_022558880.1 polyprenyl synthetase family protein -
  XFF4834R_RS08445 (XFF4834R_chr17340) ssb 1983421..1983957 (+) 537 WP_022558881.1 single-stranded DNA-binding protein Machinery gene
  XFF4834R_RS08450 (XFF4834R_chr17350) - 1984245..1985792 (-) 1548 WP_007973456.1 sensor domain-containing diguanylate cyclase -
  XFF4834R_RS08455 (XFF4834R_chr17360) - 1986017..1987024 (+) 1008 WP_022558883.1 NAD(P)-dependent alcohol dehydrogenase -
  XFF4834R_RS08460 (XFF4834R_chr17370) paoA 1987324..1987974 (+) 651 WP_022558884.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  XFF4834R_RS08465 (XFF4834R_chr17380) - 1987971..1988921 (+) 951 WP_022558885.1 xanthine dehydrogenase family protein subunit M -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18981.84 Da        Isoelectric Point: 5.3095

>NTDB_id=62725 XFF4834R_RS08445 WP_022558881.1 1983421..1983957(+) (ssb) [Xanthomonas citri pv. fuscans]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGGGQGGGGYGGGGQDYAPRRQQPA
QQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=62725 XFF4834R_RS08445 WP_022558881.1 1983421..1983957(+) (ssb) [Xanthomonas citri pv. fuscans]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAGATCGCCGGCGAGTACCTTCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTCGAAAAATACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGCGGCGGTGGTGGGATGGGCGGCGATCGCCCGCAGCGTTCGGCGCCGCGTCAGCAGGGCG
GCGGTGGCGGTGGCGGGCAGGGTGGTGGCGGATATGGTGGCGGTGGTCAGGACTACGCGCCGCGTCGTCAGCAGCCGGCC
CAGCAGCAGTCGGCGCCGCCCATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.486

100

0.483
  ssb Vibrio cholerae strain A1552

45.699

100

0.478
  ssb Neisseria meningitidis MC58

44.751

100

0.455
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.455

Multiple sequence alignment